New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2018588 = | 49 (1.000) | 4 (0.090) | 4/244 | NT | 9.1% | intergenic (‑2196/‑138) | PP_1795/PP_1797 | hypothetical protein/HlyD family secretion protein |
? | NC_002947 | 2018627 = | 34 (0.750) | intergenic (‑2235/‑99) | PP_1795/PP_1797 | hypothetical protein/HlyD family secretion protein |
TTGTCTCGCACCGTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTG > NC_002947/2018484‑2018773 | ctcatctagaaatcctttcaggcgccagtactggtggcaggcgcaacggccgcgggcgcagagggtgcaactggcggggtagcgggggcctgcgggctcgcagcCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCg > 2:44749‑M1/105‑149 (MQ=255) tcGCACCGTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGccc > 6:226978/1‑149 (MQ=255) gCACCGTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGc < 4:135929/149‑1 (MQ=255) cGTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGGGCCCGCAGGc > 4:119745/1‑149 (MQ=255) gTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGcc > 2:126207/1‑149 (MQ=255) ccAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGccccc > 7:184316/1‑149 (MQ=255) aCTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGc > 4:108345/1‑148 (MQ=255) cTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGc > 6:264819/1‑147 (MQ=255) tCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAg > 6:117424/1‑149 (MQ=255) aCCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCCGTTGCAccc > 3:241440/1‑149 (MQ=255) aCCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAg < 4:114684/141‑1 (MQ=255) aCCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAg > 3:114684/1‑141 (MQ=255) ggTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCcg > 3:209998/1‑149 (MQ=255) gTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCcg < 5:264819/148‑1 (MQ=255) ttATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGc < 5:217028/100‑1 (MQ=255) ttATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGc > 6:217028/1‑100 (MQ=255) tGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGGGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGc < 3:119745/148‑1 (MQ=255) gCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCt > 2:105412/1‑149 (MQ=255) tCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCATGCTGAGAGCCCGCAGGCCCCCGCTACCCCCCCAGTTGCACCCTCTGCGCACGCGGCCGTTGCGCCTGc > 7:270982/1‑149 (MQ=255) tCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGc > 7:229109/1‑149 (MQ=255) tCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGccacca < 4:104378/148‑1 (MQ=255) tCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGccacca < 8:229109/148‑1 (MQ=255) tGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACt > 3:203573/1‑149 (MQ=255) tATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACt < 6:243350/147‑1 (MQ=255) gAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGccac < 7:168393/134‑1 (MQ=255) gAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGccac > 8:168393/1‑134 (MQ=255) cgcgACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGaaa < 4:231673/149‑1 (MQ=255) gACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAg < 1:118536/147‑1 (MQ=255) gACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGa < 6:265505/149‑1 (MQ=255) gcgTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTc < 5:226978/149‑1 (MQ=255) cgcagcctggctgccgcgctgaagcttggcctgctgggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAg > 2:44749‑M2/46‑149 (MQ=255) ccGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAg < 3:69563/148‑1 (MQ=255) cGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAg > 7:50/1‑147 (MQ=255) gAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGa > 5:231423/1‑129 (MQ=255) gAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGa < 6:231423/129‑1 (MQ=255) tggctgccgcgctgaagcttggcctgctgggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTTCGCCTGCCACCAGTACTGGCGCCTGaaa < 7:122366‑M2/89‑1 (MQ=255) tggctgccgcgctgaagcttggcctgctgggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGaaa > 8:122366‑M2/39‑127 (MQ=255) GGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAg < 1:155447‑M1/149‑1 (MQ=255) GCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGc > 8:184316‑M1/1‑149 (MQ=255) CCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAAt > 4:203573‑M1/1‑148 (MQ=255) CCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATc > 3:108345‑M1/1‑149 (MQ=255) agcttggcctgctgggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTc < 1:44749‑M2/126‑1 (MQ=255) aaGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGa > 5:70238/1‑149 (MQ=255) cAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAATCAATCACTACGTTCGAc > 2:114502/1‑144 (MQ=255) cAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGAc < 1:114502/144‑1 (MQ=255) aGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAAt > 2:178291/1‑149 (MQ=255) aGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAAt < 4:209998/149‑1 (MQ=255) gcgcGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAAtt > 5:39316/1‑149 (MQ=255) cgcgGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAAttt < 5:117424/149‑1 (MQ=255) ggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTcga < 1:178291‑M2/140‑1 (MQ=255) gccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCgacgac < 6:39316‑M2/144‑1 (MQ=255) ccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGAcc > 3:245757‑M2/5‑149 (MQ=255) cagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCt > 4:201170‑M2/4‑149 (MQ=255) agGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTcga < 7:102453‑M2/140‑1 (MQ=255) agGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTcga > 8:102453‑M2/3‑142 (MQ=255) agGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTg > 2:150389‑M2/3‑149 (MQ=255) | TTGTCTCGCACCGTCCCAACATCCTCACTCGGTTGGACCGCATCTTGGTTATGGCCGGTGGCTCCATTTCGCTGTATGGCGAGCGCGACCGCGTTATTGCCGAGCTGGCTGCCCAGCAGGCCAAGCTTCAGCGCGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTG > NC_002947/2018484‑2018773 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |