| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2693981 = | 53 (1.080) | 3 (0.070) | 3/246 | NT | 5.6% | coding (272/2394 nt) | PP_2362 | usher protein |
| ? | NC_002947 | 2694052 = | 51 (1.110) | coding (343/2394 nt) | PP_2362 | usher protein | |||||
GTTGCGATCACCCACTTGCTGTTCTGGCAACCAGGCTGGCGGCACCTGCAGCAGCAGGCGCTGGTTCTGACTGTCGTAGTCGGTGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2694135‑2693981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcacACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGTAT > NC_002947/2694052‑2694195 GTTGCGATCAACCACTTGCTGTTCAGGCAACCAGGCTGGCGGCACCTGCAGCAGAAGGCGCTGGTTCTGACTGTCGTAGTCGGTGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCAGGCGGTTGCCCGGCAGCGAGACGCCGG > 3:143033/1‑149 GATCACCCACTTGCTGTTCTGGCAACCAGGCTGGCGGCACCTGCAGCAGCAGGCGCTGGTTCTGACTGTCGTAGTCGGTGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCA > 5:294872/1‑149 GGTGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGT > 6:64689/1‑149 AGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGC > 7:16931/1‑148 CCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCT > 5:240138/1‑61 CCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCT < 6:240138/61‑1 GGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGAT < 5:64689/149‑1 GCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGT < 6:264318/149‑1 CTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGTA < 5:69951/149‑1 CACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGTAT < 1:157610/147‑1 CACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGTAT < 8:12011/147‑1 GTTGCGATCACCCACTTGCTGTTCTGGCAACCAGGCTGGCGGCACCTGCAGCAGCAGGCGCTGGTTCTGACTGTCGTAGTCGGTGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2694135‑2693981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcacACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGACCTGTAT > NC_002947/2694052‑2694195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |