New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3279511	59 (1.210)	4 (0.090)	4/248	NT	8.5%	coding (569/594 nt)	PP_2879	hypothetical protein
	?	NC_002947	= 3279583	30 (0.650)					coding (497/594 nt)	PP_2879	hypothetical protein

ACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3279357‑3279511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgctATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGCCGAAGTCGACAAGGCGCTGCGCGAGCGTCGTTCAG  <  NC_002947/3279583‑3279500                                                                                                                                                                                                                                                 ACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAAC                                                                                            >  4:270598/1‑149  CCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACG                                                                                           >  7:50137/1‑149    CGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGAC                                                                                         <  6:93640/149‑1      TCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGC                                                                                       <  3:163034/149‑1      TCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGC                                                                                       <  7:268898/149‑1                                                        CTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGC                                     >  5:146153/1‑149                                                               CGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGCCGAAGTC                              >  4:35381/1‑149                                                                                          GCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGCCGAAGTCGACAAGGCGCTGCGCGAGCGTCGTTCA   <  6:146153/149‑1                                                                                           CAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGCCGAAGTCGACAAGGCGCTGCGCGAGCGTCGTTCAG  <  3:35381/149‑1                                                                                                                                                                                                                                                 ACCCGTCGTTCATCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCTTGGTTCGCGCTAACGGCTGAATTTTGCGCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3279357‑3279511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgctATACGCGCAACTTCGACGACCTGGAGGGGCCGGCCTACAAGATCGAGGCCGAAGTCGACAAGGCGCTGCGCGAGCGTCGTTCAG  <  NC_002947/3279583‑3279500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.