New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3279511	59 (1.210)	4 (0.090)	4/248	NT	8.5%	coding (569/594 nt)	PP_2879	hypothetical protein
	?	NC_002947	= 3279583	30 (0.650)					coding (497/594 nt)	PP_2879	hypothetical protein

GCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACGGCGTTCACATCGGGGT  >  NC_002947/3279441‑3279730                                                                                                                                               |                                                                                                                                                    gcagggCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCAATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTc                                                                                                                                               <  4:178133/146‑1 (MQ=255)      gCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGc                                                                                                                                           >  4:157467/1‑148 (MQ=255)        aaGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCaaa                                                                                                                                        <  2:31410/149‑1 (MQ=255)           aCAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATtc                                                                                                                                     <  6:2166/149‑1 (MQ=255)           aCAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATtc                                                                                                                                     <  6:6476/149‑1 (MQ=255)            cAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATtc                                                                                                                                     <  2:86740/148‑1 (MQ=255)             aGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATtcct                                                                                                                                   <  8:216426/149‑1 (MQ=255)              ggCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATtcctc                                                                                                                                  <  7:259631/149‑1 (MQ=255)                cgcTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCa                                                                                                                                >  4:162231/1‑149 (MQ=255)                                  cAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCACCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCCCGCCCAGCTCCTGATa                                                                                                                >  3:193476/1‑147 (MQ=255)                                  cAATGGCAGCGATCAGCGGGACAGGACTGATCGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATa                                                                                                                <  4:193476/147‑1 (MQ=255)                                      ggCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGc                                                                                                                             >  1:221231/1‑130 (MQ=255)                                      ggCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGc                                                                                                                             <  2:221231/130‑1 (MQ=255)                                        cAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACtgctgc                                                                                                         <  3:162231/148‑1 (MQ=255)                                                 gCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGa                                                                                               <  6:311766/149‑1 (MQ=255)                                                            cTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATagcgtcgttcaggcctggcccgctgatcgctgccattgcgctccacatctacagcgcctgtcttg                                                                                    <  3:35381‑M2/149‑66 (MQ=255)                                                             tGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATagcgtcgttcaggcctggcccgctgatcgctgccattgcgctccacatctacagcgcctgtcttgc                                                                                   <  6:146153‑M2/149‑67 (MQ=255)                                                                acgacgCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCcac                                                                                 >  5:166431/1‑148 (MQ=255)                                                                  gacgCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGcc                                                                                    >  2:203959/1‑143 (MQ=255)                                                                  gacgCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGcc                                                                                    <  1:203959/143‑1 (MQ=255)                                                                         gcgcAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGt                                                                       >  7:41049/1‑149 (MQ=255)                                                                                     gTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTAGGCAt                                                           >  5:147023/1‑149 (MQ=255)                                                                                        gACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATagcgtcgttcaggcctggcccgctgatcgctgccattgcgctccacatctacagcgcctgtcttgcccggcgcaaaattcagccgttagcgcg                                                        >  4:35381‑M2/1‑56 (MQ=255)                                                                                        gACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATcgg                                                        >  5:18474/1‑149 (MQ=255)                                                                                          cTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATcggcg                                                      <  3:157467/149‑1 (MQ=255)                                                                                              ggCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGccc                                                  >  5:282772/1‑149 (MQ=255)                                                                                               gCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATagcgtcgttcaggcctggcccgctgatcgctgccattgcgctccacatctacagcgcctgtcttgcccggcgcaaaattcagccgttagcgcgaaccaag                                                 >  5:146153‑M2/1‑49 (MQ=255)                                                                                                 cTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCcggc                                               >  8:49782/1‑149 (MQ=255)                                                                                                         tGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAgat                                        >  6:227255/1‑148 (MQ=255)                                                                                                          gTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAgatg                                       <  3:187817/148‑1 (MQ=255)                                                                                                          gTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATAGGCGGCCCGGCGGAAgatga                                      >  2:233887/1‑149 (MQ=255)                                                                                                          gTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTAGGCATCGGCGGCCCGGCGGa                                            <  6:147023/143‑1 (MQ=255)                                                                                                                 ggccCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTc                               <  6:166431/149‑1 (MQ=255)                                                                                                                               gtcgAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACgg                 >  2:14409/1‑149 (MQ=255)                                                                                                                               gtcgAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACg                  <  7:49782/148‑1 (MQ=255)                                                                                                                                          gcgTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACGGCGTTCACATCg      <  8:41049/149‑1 (MQ=255)                                                                                                                                           cgTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTc                                                                   >  7:279174/1‑87 (MQ=255)                                                                                                                                           cgTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTc                                                                   <  8:279174/87‑1 (MQ=255)                                                                                                                                              ataGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACGGCGTTCACATCGGGGt  >  8:9020/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    GCCGGGCAAGACAGGCGCTGTAGATGTGGAGCGCAATGGCAGCGATCAGCGGGCCAGGCCTGAACGACGCTCGCGCAGCGCCTTGTCGACTTCGGCCTCGATCTTGTAGGCCGGCCCCTCCAGGTCGTCGAAGTTGCGCGTATAGCGTCGGGCAAATTCCTCCACGCCCAGCTCCTGATACTGCTGCACATGCTTGAGCTCGTGCGCCCACAAGGCCACGTTGTCCTCGGCATCGGCGGCCCGGCGGAAGATGATCGTGTCGATCAGTGTAACGGCGTTCACATCGGGGT  >  NC_002947/3279441‑3279730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.