| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3439660 = | 50 (1.020) | 3 (0.060) | 3/248 | NT | 5.9% | coding (582/1167 nt) | PP_3059 | tail sheath protein |
| ? | NC_002947 | 3439697 = | 48 (1.040) | coding (619/1167 nt) | PP_3059 | tail sheath protein | |||||
TGTCGTCGCCGTCCAGGAACTCGACCGAACGGGTGGTGCCGGTGATGCCGACGAACTCCTTGTTGGAAGGCGAGGCCCAGAAACCGTATTCGGTGTCAGTCCAGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3439811‑3439660‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcaGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAACGCCAATA > NC_002947/3439697‑3439844 TGTCGTCGCCGTCCAGGAACTCGACCGAACGGGTGGTGCCGGTGATGCCGACGAACTCCTTGTTGGAAGGCGAGGCCCAGAAACCGTATTCGGTGTCAGTCCAGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTG < 3:77379/149‑1 GCCCAGAAACCGTATTCGGTGTCAGTCCAGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACG > 1:19443/1‑72 GCCCAGAAACCGTATTCGGTGTCAGTCCAGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACG < 2:19443/72‑1 AGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCC < 1:281543/135‑1 AGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCC > 2:281543/1‑135 CTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCG > 7:216339/1‑147 GGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAAC < 6:182480/148‑1 GGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAAC < 6:32161/148‑1 GGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGA > 7:113761/1‑102 GGTGGCAGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGA < 8:113761/102‑1 AGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAACGCCAATA > 3:242612/1‑149 AGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAACGCCAATA > 7:267283/1‑149 AGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAACGCCAAT > 8:21270/1‑148 TGTCGTCGCCGTCCAGGAACTCGACCGAACGGGTGGTGCCGGTGATGCCGACGAACTCCTTGTTGGAAGGCGAGGCCCAGAAACCGTATTCGGTGTCAGTCCAGGCAAACAGGCCTGCCACCCAGGCCGAGCCCGGCTGATCGACGGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3439811‑3439660‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcaGGCCTGTTTGCCTGGACTGACACCGAATACGGTTTCTGGGCCTCGCCTTCCAACAAGGAGTTCGTCGGCATCACCGGCACCACCCGTTCGGTCGAGTTCCTGGACGGCGACGACACCTGCCGGGCCAACCTGCTCAATAACGCCAATA > NC_002947/3439697‑3439844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |