New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3512284	59 (1.210)	3 (0.060)	3/254	NT	5.4%	coding (952/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3512314	48 (1.010)					coding (982/4158 nt)	PP_3108	rhs family protein

CTGACGGTCGACAGCGTACTCGGCCGCGGCTGGGTGCTGCCCTGGGAGCAGAGCCTGCGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTACAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3512134‑3512284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCTCGGTGCACACCAGGTACACCTGCTCGTGCGGGTT  <  NC_002947/3512314‑3512278                                                                                                                                                                                              CTGACGGTCGACAGCGTACTCGGCCGCGGCTGGGTGCTGCCCTGGGAGCAGAGACTGCGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTAGAACCC                                         <  4:223637/149‑1                                        CCCTGGGAGCAGAGCCTGAGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTACAACCCGCCCTCGGTGCACACCAGGTACACCTGCTCGTGCGGG    <  2:57227/147‑1                                          CTGGGAGCAGAGCCTGCGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTACAACCCGCCCTCGGTGCACACCAGGTACACCTGCTCGTGCGGGTT  <  3:7060/147‑1                                          CTGGGAGCAGAGCCTGCGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTACAACCCGCCCTCGGTGCACACCAGGTACACCTGCTCGTGCGGGTT  >  4:7060/1‑147                                                                                                                                                                                              CTGACGGTCGACAGCGTACTCGGCCGCGGCTGGGTGCTGCCCTGGGAGCAGAGCCTGCGCCGCCAGGGGGCATTCATCTACCTCACCGACAACCAGGGCCGCGAAGTCCCGTTCGTGACCCTGCAACCGGGGCAGCGCATCTACAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3512134‑3512284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCTCGGTGCACACCAGGTACACCTGCTCGTGCGGGTT  <  NC_002947/3512314‑3512278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.