New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3712391 =	44 (0.900)	4 (0.090)	4/250	NT	9.8%	coding (605/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha
	?	NC_002947	3712443 =	32 (0.690)					coding (553/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha

AGGTGGTACTGCAGCGCACCTCTTACGGCCCCTACTCCCGCGCGATGATCCGTATCTGCAAGGAAGAGAGCTTCCACCAGCGCCAGGGCTACGAAATGCTCCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3712541‑3712391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAGTACCACCTGGTTGACGATGGCGGCGCCGTCCACCAGCCAGCCCACAGCGCCCAT  >  NC_002947/3712443‑3712587                                                                                                                                                                                                                                                                                                          AGGTGGTACTGCAGCGCACCTCTTACGGCCCCTACTCCCGCGCGATGATCCGTATCTGCAAGGAAGAGAGCTTCCACCAGCGCCAGGGCTACGAAATGCTCCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAG                                                                                                                                                     <  1:25965/149‑1                                                                                   CCAGGGCTACGAAATGCTCCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAG                                                                     >  3:40099/1‑147                                                                                   CCAGGGCTACGAAATGCTCCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAG                                                                     <  4:40099/147‑1                                                                                                     CCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATAATAGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAGTACCACC                                                 >  1:100696/1‑149                                                                                                             TGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAGTACCACCTGGTTGAC                                         <  2:100696/149‑1                                                                                                                                                    AGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAGTACCACCTGGTTGACGATGGCGGCGCCGTCCACCAGCCAGCCCACAGCGCCCAT  >  5:167903/1‑149                                                                                                                                                                                                                                                                                                          AGGTGGTACTGCAGCGCACCTCTTACGGCCCCTACTCCCGCGCGATGATCCGTATCTGCAAGGAAGAGAGCTTCCACCAGCGCCAGGGCTACGAAATGCTCCTGACCATGATGCGCCAGGGCACCCAAGCCCAGCGCGACATGGTTCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3712541‑3712391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAGTACCACCTGGTTGACGATGGCGGCGCCGTCCACCAGCCAGCCCACAGCGCCCAT  >  NC_002947/3712443‑3712587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.