New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3712391 = | 44 (0.900) | 4 (0.090) | 4/250 | NT | 9.8% | coding (605/990 nt) | paaA | ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha |
? | NC_002947 | 3712443 = | 32 (0.690) | coding (553/990 nt) | paaA | ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha |
GGCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTG > NC_002947/3712244‑3712530 | ggCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTc < 4:253283/149‑1 (MQ=255) ggCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTc < 5:77837/149‑1 (MQ=255) atgggcgctgtgggctggctggtggacggcgccgccatcgtcaaccaggtggtactgcagcgcacctcttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCt > 5:167903‑M1/146‑149 (MQ=255) ggTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCTGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGaa < 3:73499/149‑1 (MQ=255) gcgcAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTgg < 2:231378/148‑1 (MQ=255) gcAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTg > 6:254538/1‑149 (MQ=255) gTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGccc < 8:137238/149‑1 (MQ=255) ttCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCAt < 6:269902/126‑1 (MQ=255) ttCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCAt > 5:269902/1‑126 (MQ=255) gtcaaccaggtggtactgcagcgcacctcttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatca < 2:100696‑M1/43‑1 (MQ=255) gTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCAt < 8:213460/116‑1 (MQ=255) gTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCAt > 7:213460/1‑116 (MQ=255) tCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATg > 5:240626/1‑149 (MQ=255) ggCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGt > 5:38908/1‑148 (MQ=255) gCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGAGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGt < 1:273141/147‑1 (MQ=255) cgattcttCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCa < 5:266894/141‑1 (MQ=255) ggtggtactgcagcgcacctcttacggcccctactcccgcgctattatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAgg > 1:100696‑M1/99‑149 (MQ=255) tGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAg < 8:91656/148‑1 (MQ=255) tCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCAtt > 8:102285/1‑149 (MQ=255) ccAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCAtt < 5:254538/145‑1 (MQ=255) gCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGcc < 1:284452/149‑1 (MQ=255) gCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGcc < 2:112116/149‑1 (MQ=255) cATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCt < 5:234918/149‑1 (MQ=255) cttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTgg < 4:40099‑M1/69‑1 (MQ=255) cttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTgg > 3:40099‑M1/79‑147 (MQ=255) tGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAg > 2:194734/1‑149 (MQ=255) gTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGc > 5:154538/1‑149 (MQ=255) ttCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCGCTTCCTTGc < 1:194734/149‑1 (MQ=255) gtaaTCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCGTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCtggttg > 4:126300/4‑131 (MQ=255) tCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTg > 4:249602/1‑147 (MQ=255) tCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGa > 5:61593/1‑148 (MQ=255) gggCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGat > 6:68452/1‑149 (MQ=255) ccGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGatcat < 7:40490/149‑1 (MQ=255) gAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATcg > 7:203878/1‑149 (MQ=255) tcatcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCgg < 8:203878/149‑1 (MQ=255) tcatcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGGCGCGCTGGGCTTGGGTGCGCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCgg < 6:186523/149‑1 (MQ=255) catcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCgg > 2:213566/1‑148 (MQ=255) catcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCgg > 2:34781/1‑148 (MQ=255) atcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGa < 5:68452/149‑1 (MQ=255) gcgcCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAg < 3:249602/149‑1 (MQ=255) gcCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCGGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAggg < 3:258257/149‑1 (MQ=255) ggCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGcc < 6:38908/149‑1 (MQ=255) ggCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGcc < 6:61593/149‑1 (MQ=255) ccacAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATGGCGCGGGAGTAGGGGCCGTAag > 4:64552/1‑149 (MQ=255) ccacAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAag < 1:34781/149‑1 (MQ=255) cacaGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTaa > 8:12826/1‑147 (MQ=255) gCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGcc > 2:216658/1‑138 (MQ=255) gCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGcc < 1:216658/138‑1 (MQ=255) gTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCt < 6:240626/149‑1 (MQ=255) gTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCt < 7:102285/149‑1 (MQ=255) ttGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTg < 1:213566/149‑1 (MQ=255) | GGCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTG > NC_002947/3712244‑3712530 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |