New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884913	54 (1.100)	4 (0.090)	4/248	NT	7.1%	coding (798/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884961	53 (1.150)					coding (846/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

GGCCGCGAGGCCGTTTCACGCGCCGCCCGCCTGACCCACCGCTTGCTTGCCTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884761‑3884913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcaaCTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGACGGGCTCAGGCGAGCGCCCAGGCGTTCTGCCTTGAGCAAGGTATGCAGGTCTATACGTTGGCTGTGCAGCGATTGACGGGA  <  NC_002947/3884961‑3884818                                                                                                                                                                                                                                                                                                           GGCCGCGAGGCCGTTTCACGCGCCGCCCGCCTGTCCCACCGCTTGCTTGCCTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCT                                                                                                                                                      <  2:5034/149‑1    CGCGAGGCCGTTTCACGCGCCGCCCGCCTGACCCACCGCTTGCTTGCCTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGC                                                                                                                                                    >  1:176291/1‑148                                               TTGCCTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGC                                                                                                        >  5:244737/1‑149                                                   CTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTG                                                                                                     >  2:143186/1‑148                                                           CCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTG                                                                                               <  1:143186/146‑1                                                                     GCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGA                                                                                   <  6:244737/148‑1                                                                                                                                                    CTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGACGGGCTCAGGCGAGCGCCCAGGCGTTCTGCCTTGAGCAAGGTATGCAGGTCTATACGTTGGCTGTGCAGCGATTGACGGG   <  8:129560/149‑1                                                                                                                                                    CTGCAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGACGGGCTCAGGCGAGCGCCCAGGCGTTCTGCCTTGAGCAAGGTATGCAGGTCTATACGTTGGCTGTGCAGCGATTGACGG    >  6:207531/1‑148                                                                                                                                                       CAACTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGACGGGCTCAGGCGAGCGCCCAGGCGTTCTGCCTTGAGCAAGGTATGCAGGTCTATACGTTGGCTGTGCAGCGATTGACGGGA  <  5:154691/147‑1                                                                                                                                                                                                                                                                                                           GGCCGCGAGGCCGTTTCACGCGCCGCCCGCCTGACCCACCGCTTGCTTGCCTTCTCTTCCCGTCAATCGCTGCACAGCCAACGTATAGACCTGCATACCTTGCTCAAGGCAGAACGCCTGGGCGCTCGCCTGAGCCCGTCGATAACCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884761‑3884913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcaaCTGCTGGTCATCCGCCTCCACGGGCCACAGGTCTTTGGCCGCGTGCACTTGCAGGGTTATCGACGGGCTCAGGCGAGCGCCCAGGCGTTCTGCCTTGAGCAAGGTATGCAGGTCTATACGTTGGCTGTGCAGCGATTGACGGGA  <  NC_002947/3884961‑3884818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.