New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4023466	38 (0.780)	4 (0.080)	4/256	NT	7.3%	coding (1043/1536 nt)	emrB	multidrug transporter permease
	?	NC_002947	= 4023571	64 (1.340)					coding (938/1536 nt)	emrB	multidrug transporter permease

GAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4023372‑4023466 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCGCACCGGTTCGACTTGCGGGTGCTGGCTGGGTTGGCGTTCCTGGCGATCGGCACCAGT  <  NC_002947/4023571‑4023462                                                                                                                                                                                                               GAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCG                                                           >  2:80297/1‑148                                                  TGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCGCACCGGTTCGACTTGCGGGTGCTGGCTGGGTTGGCGTTCCTGGCGATCGG         >  4:53756/1‑149                                                       GTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCGTACCGGTTCGACTTGCGGGTGCTGGCTGGGTTGGCGTTCCTGGCGATCGGCACCA    <  1:80297/149‑1                                                          CACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCGCACCGGTTCGACTTGCGGGTGCTGGCTGGGTTGGCGTTCCTGGCGATCGGCACCAGT  <  3:53756/148‑1                                                                                                                                                                                                               GAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4023372‑4023466 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggCGCCGATCGGTTTGCTGCCGGTGATCATGTCGCCGTTCGTGGGCAAATATGCGCACCGGTTCGACTTGCGGGTGCTGGCTGGGTTGGCGTTCCTGGCGATCGGCACCAGT  <  NC_002947/4023571‑4023462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.