| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4023466 | 38 (0.780) | 4 (0.080) | 4/256 | NT | 7.3% | coding (1043/1536 nt) | emrB | multidrug transporter permease |
| ? | NC_002947 | = 4023571 | 64 (1.340) | coding (938/1536 nt) | emrB | multidrug transporter permease | |||||
GTGCGGCGGCAGATCGGACAGCAGAATGCTCAAGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGT > NC_002947/4023327‑4023614 | gTGCGGCGGCAGATCGGACAGCAGAATGCTCAAGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑t < 5:126323/147‑1 (MQ=255) cggcggCAGATCGGACAGCAGAATGCTCAAGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCa < 3:226473/149‑1 (MQ=255) gATCGGACAGCAGAATGCTCAAGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGcc < 3:214427/149‑1 (MQ=255) aaGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATCAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGCTGAAAACGCCACGCATGTAGCAACTGGTCCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGc > 5:139759/1‑147 (MQ=255) aGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAg > 4:222624/1‑149 (MQ=255) cATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAAcc > 2:87984/1‑149 (MQ=255) gaagaaCAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGt > 3:2367/1‑149 (MQ=255) gaaCAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGcgccgatcggtttgctgccggtgatcatgtcgccgttcgtgggcaaatatgcg > 2:80297‑M1/1‑95 (MQ=255) caacGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCa > 8:16260/1‑148 (MQ=255) aaTCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACGTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCAAATATGCGCAccg < 4:2367/149‑3 (MQ=255) tCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAAc < 4:182380/149‑1 (MQ=255) ccATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGc > 1:171881/1‑149 (MQ=255) ccATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGc > 4:20673/1‑149 (MQ=255) ccATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGACCACGAACGGc > 8:233873/1‑149 (MQ=255) acaacTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACAt < 3:222624/148‑1 (MQ=255) aacTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGa > 2:237252/1‑148 (MQ=255) acTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATc < 2:171881/149‑1 (MQ=255) gCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCAcc > 8:16126/1‑149 (MQ=255) cAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCgg > 3:136812/1‑147 (MQ=255) cAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGgca < 7:233873/149‑1 (MQ=255) cAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGgca < 3:20673/149‑1 (MQ=255) aGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCACTTCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGgca < 1:87984/149‑1 (MQ=255) cGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCg < 1:237252/149‑1 (MQ=255) cGTGCT‑GAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGa > 4:234385/1‑149 (MQ=255) gTGCT‑GAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGAt < 3:234385/149‑1 (MQ=255) tGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGcgccgatcggtttgctgccggtgatcatgtcgccgttcgtgggcaaatatgcgcaccggttcgacttgcgggtgctggctgggttggcgttcctggcgatcgg > 4:53756‑M1/1‑46 (MQ=255) gAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGgcg > 2:56737/1‑149 (MQ=255) gTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGcgccgatcggtttgctgccggtgatcatgtcgccgttcgtgggcaaatatgcgtaccggttcgacttgcgggtgctggctgggttggcgttcctggcgatcggcacca < 1:80297‑M1/149‑109 (MQ=255) cACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGcgccgatcggtttgctgccggtgatcatgtcgccgttcgtgggcaaatatgcgcaccggttcgacttgcgggtgctggctgggttggcgttcctggcgatcggcaccagt < 3:53756‑M1/148‑111 (MQ=255) tCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAg > 2:5808/1‑149 (MQ=255) gCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGACACTGCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCa < 1:256516/148‑1 (MQ=255) tGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCt > 1:10032/1‑149 (MQ=255) tGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCt > 3:51173/1‑149 (MQ=255) ggTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGgc > 3:143644/1‑118 (MQ=255) ggTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGgc < 4:143644/118‑1 (MQ=255) gTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGc > 5:293432/1‑149 (MQ=255) gAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGcc > 3:69763/1‑148 (MQ=255) aaCCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAg < 7:16260/149‑1 (MQ=255) ccGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAggg > 7:262986/1‑148 (MQ=255) cACGCATGTAGCAACTGGTTCCGA‑TC‑GCCTGGAACGCCAACCCAGCCA‑‑GCACCCGCAACTCGAACCGGTGCGCATATTTGGCCACTATCGGCGACATGATCACCGGCAGCAAACCGTTCGGCGCCACCGCCAGGCCTGCCCAGGTcgcg < 6:139759/149‑1 (MQ=255) cACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTcgcg < 1:56737/149‑1 (MQ=255) aaCTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATc > 7:122421/1‑149 (MQ=255) aCTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGccagttgctacatgcgtgccggtttcaccagcgaggtg < 3:53756‑M2/148‑39 (MQ=255) tGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTACGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGccagttgctacatgcgtgccggtttcaccagcgaggtggac < 1:80297‑M2/149‑42 (MQ=255) gTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGt > 5:200102/1‑149 (MQ=255) gTGCAGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACAGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTAGCGGTATAGCCCATCAGCGt > 8:266606/1‑149 (MQ=255) | GTGCGGCGGCAGATCGGACAGCAGAATGCTCAAGGTCGGCATGAAGAACAACGCCACGCCAATCCCCATGAACAACTGCACCAAGGCCACGTGCTGGAAGTCCACCTCGCTGGTGAAACCGGCACGCATGTAGCAACTGGTGCCGA‑TC‑GCCAGGAACGCCAACCCAGCCA‑‑GCACCCGCAAGTCGAACCGGTGCGCATATTTGCCCACGAACGGCGACATGATCACCGGCAGCAAACCGATCGGCGCCACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGT > NC_002947/4023327‑4023614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |