| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4035906 | 60 (1.230) | 4 (0.080) | 4/254 | NT | 6.5% | coding (957/2145 nt) | PP_3557 | methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 4035965 | 56 (1.180) | coding (1016/2145 nt) | PP_3557 | methyl‑accepting chemotaxis transducer | |||||
CGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4035756‑4035906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGGG < NC_002947/4035965‑4035819 CGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGG > 3:64656/1‑149 TACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGTTTTCAGGCACATC > 5:226811/1‑149 CAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTC > 7:219538/1‑149 GACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCA < 6:226811/149‑1 CAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCA < 8:219538/149‑1 GGCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTC < 1:108103/148‑1 GCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGG > 2:76606/1‑149 GCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGG < 5:63546/149‑1 GCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGG > 6:277017/1‑149 GCGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGG > 6:63546/1‑149 CGTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGGG < 1:76606/149‑1 CGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4035756‑4035906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgTTTTCCGGCACATCCAGCAGCACGCCCCAGGGCTGGGCGTCCGGGATTGGCCGGAATGCCGCCAGCACCTTCAAGCGCTGCCGGTCGTGGAGGGTGGTCAGCTTGCCATCGGCCAGCTTGCGCACCAGCTCGGCGCCTTTGGTCGGG < NC_002947/4035965‑4035819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |