New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4126610	35 (0.720)	3 (0.060)	3/250	NT	9.0%	coding (751/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	= 4126636	27 (0.580)					coding (725/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D

CGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4126499‑4126610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACAACGACATCTGGAG  <  NC_002947/4126636‑4126489                                                                                                                                                                                                                                                                      cggTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCGCAGTGGCCAGCGCAGGCTGGTGCCGGCTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAG                                                                                                                 <  1:81118/146‑1                                                      TTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCTCAAGGACGCGTGGAACCAGTACTACGC                                                                                                                          <  1:275260/87‑1                                                      TTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCTCAAGGACGCGTGGAACCAGTACTACGC                                                                                                                          >  2:275260/1‑87                                                                                                      cgatctCCGGCTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACA               <  5:74912/140‑1                                                                                                           GCCGGCTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACAACGACAT        <  3:26526/148‑1                                                                                                             CGGCTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACA               >  6:74912/1‑139                                                                                                               GCTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACAACGACATCTGGA   <  7:153652/149‑1                                                                                                                CTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACAACGACATCTGGAG  >  6:18625/1‑149                                                                                                                                                                                                                                                                      CGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4126499‑4126610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcTCAAGGACGCGTGGAACCAGTACTACGCCGGCACCAGCCTGAGCTGGCCACTGAGCGAGGCGCTGGCGCTGATTGGCGGTTTCAACTATTACAAGGCTGTGGATGAAGGGCAGCAGCGCCTGGGCGCCTTTGACAACGACATCTGGAG  <  NC_002947/4126636‑4126489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.