New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4126610	35 (0.720)	3 (0.060)	3/250	NT	9.0%	coding (751/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	= 4126636	27 (0.580)					coding (725/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D

CACCAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCATAGAAGGTCACGAAGTTCTCCCGCAGGTCG  >  NC_002947/4126463‑4126758                                                                                                                                                    |                                                                                                                                                     cACCAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCg                                                                                                                                                     <  4:22865/149‑1 (MQ=255)  aCCAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCg                                                                                                                                                     >  7:182815/1‑148 (MQ=255)    cAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCgtag                                                                                                                                                  >  3:199856/1‑149 (MQ=255)    cAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCgtag                                                                                                                                                  >  5:18625/1‑149 (MQ=255)          gcACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTgg                                                                                                                                            >  2:64264/1‑149 (MQ=255)           cacaCCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGt                                                                                                                                           >  6:178441/1‑149 (MQ=255)             cacCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTc                                                                                                                                         <  8:234353/149‑1 (MQ=255)                ccAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCAc                                                                                                                                      <  8:182815/149‑1 (MQ=255)                    cTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGt                                                                                                                                  <  8:258253/149‑1 (MQ=255)                           cTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAg                                                                                                                           >  6:18625‑M2/1‑148 (MQ=255)                            tCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAgc                                                                                                                          <  7:153652‑M2/149‑3 (MQ=255)                                 aTGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCgtagta                                                                                                                                                >  4:53141/1‑122 (MQ=255)                                 aTGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCgtagta                                                                                                                                                <  3:53141/122‑1 (MQ=255)                                 aTGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAgccggc                                                                                                                      <  3:26526‑M2/148‑7 (MQ=255)                                     cggtgtcAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCGCAGTGGCCAGCGCAGGCTGGTGCCGGCtcaaggacgcgtggaaccagtactacgccggcaccag                                                                                                                 <  1:81118‑M1/146‑38 (MQ=255)                                        tGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAgccggagatcg                                                                                                                 <  5:74912‑M2/146‑12 (MQ=255)                                        tGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAgccg                                                                                                                        >  6:74912‑M2/1‑135 (MQ=255)                                            aaaGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGgc                                                                                                          >  5:197964/1‑149 (MQ=255)                                            aaaGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGgc                                                                                                          <  2:248169/149‑1 (MQ=255)                                                gcgcCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACt                                                                                                                  <  3:174574/137‑1 (MQ=255)                                                gcgcCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACt                                                                                                                  >  4:174574/1‑137 (MQ=255)                                                gcgcCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGgctgac                                                                                                      <  5:178626/149‑1 (MQ=255)                                                gcgcCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGgctgac                                                                                                      >  6:178626/1‑149 (MQ=255)                                                     cAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTa                                                                                                                    <  4:33017/130‑1 (MQ=255)                                                     cAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTa                                                                                                                    >  3:33017/1‑130 (MQ=255)                                                     cAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGgctgacgctga                                                                                                 >  3:164083/1‑149 (MQ=255)                                                         cgcTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATg                                                                                             <  4:199856/149‑1 (MQ=255)                                                         cgcTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATg                                                                                             <  6:197964/149‑1 (MQ=255)                                                                 cccTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTg                                                                                      <  5:178441/148‑1 (MQ=255)                                                                    ttCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGcc                                                                                  >  7:59493/1‑149 (MQ=255)                                                                           acaGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATc                                                                           >  3:285606/1‑149 (MQ=255)                                                                                      aTAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCccacca                                                                 <  4:164083/148‑1 (MQ=255)                                                                                         gTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAgg                                                             >  8:292094/1‑149 (MQ=255)                                                                                          ttGAAACCGCCAATCAGCGCCAGCGCCTCGGTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGc                                                            >  1:23834/1‑149 (MQ=255)                                                                                          ttGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCtcaaggacgcgtggaaccagtactacgc                                                                                                                          <  1:275260‑M1/87‑29 (MQ=255)                                                                                          ttGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCtcaaggacgcgtggaaccagtactacgc                                                                                                                          >  2:275260‑M1/1‑59 (MQ=255)                                                                                                ccGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCACCCACCATAGGCGATCCa                                                      <  8:59493/149‑1 (MQ=255)                                                                                                 cGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAg                                                     <  4:26526/149‑1 (MQ=255)                                                                                                        cagcgccagcgcCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAAt                                              >  4:191082/1‑149 (MQ=255)                                                                                                         agcgccagcgccTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATc                                             <  1:64264/149‑1 (MQ=255)                                                                                                                     tCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGgccgc                                  >  5:38937/1‑148 (MQ=255)                                                                                                                     tCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGgccgc                                  >  1:114221/1‑148 (MQ=255)                                                                                                                         tCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCa                                >  8:133264/1‑146 (MQ=255)                                                                                                                               gCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCGCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCATAGAAGGt                        >  7:30292/1‑148 (MQ=255)                                                                                                                                  aGCTCAGGCTGGTTCCGGCGTATTACTGGTTCCAGGCGTCGTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCATAGAAGGTCACg                    <  8:30292/149‑1 (MQ=255)                                                                                                                                         gCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCACCCCCACCATAGGCGATCCAGTGCGAATCGACCGGGCCGCCATAGAAGGTCACGAAGTtct             >  4:182403/1‑149 (MQ=255)                                                                                                                                          cgatctccggctcaaggacgcgtggaaccagtactacgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgaca               <  5:74912‑M1/140‑136 (MQ=255)                                                                                                                                          cTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAgccggcaccagcctgcgctggccactgcgcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgacaccg            <  1:81118‑M2/149‑113 (MQ=255)                                                                                                                                           tGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCATAGAAGGTCACGAAGTTCTcc           <  6:38937/149‑1 (MQ=255)                                                                                                                                               gCCGGCtcaaggacgcgtggaaccagtactacgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgacaacgacat        <  3:26526‑M1/148‑143 (MQ=255)                                                                                                                                                 cGGCtcaaggacgcgtggaaccagtactacgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgaca               >  6:74912‑M1/1‑4 (MQ=255)                                                                                                                                                 cGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGgccg                                   >  6:26651/1‑119 (MQ=255)                                                                                                                                                 cGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGgccg                                   <  5:26651/119‑1 (MQ=255)                                                                                                                                                   gCtcaaggacgcgtggaaccagtactacgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgacaacgacatctgga   <  7:153652‑M1/149‑148 (MQ=255)                                                                                                                                                   gCGTAGTACTGGTTCCACGCGTCCTTGAgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaa                                                                 >  2:275260‑M2/1‑28 (MQ=255)                                                                                                                                                   gCGTAGTACTGGTTCCACGCGTCCTTGAgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaa                                                                 <  1:275260‑M2/87‑60 (MQ=255)                                                                                                                                                    ctcaaggacgcgtggaaccagtactacgccggcaccagcctgagctggccactgagcgaggcgctggcgctgattggcggtttcaactattacaaggctgtggatgaagggcagcagcgcctgggcgcctttgacaacgacatctggag  >  6:18625‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CACCAAAGCGCACACCCAGCTTGGCGCTCCAGATGTCGTTGTCAAAGGCGCCCAGGCGCTGCTGCCCTTCATCCACAGCCTTGTAATAGTTGAAACCGCCAATCAGCGCCAGCGCCTCGCTCAGTGGCCAGCTCAGGCTGGTGCCGGCGTAGTACTGGTTCCACGCGTCCTTGAGCCGGCTACTGAACAGGCTGACGCTGACATGCTCATTGAGCCTGTAATCCCCCCCACCATAGGCGATCCAGGGCGAATCGACCGGGCCGCCATAGAAGGTCACGAAGTTCTCCCGCAGGTCG  >  NC_002947/4126463‑4126758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.