New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243539	44 (0.900)	3 (0.060)	3/248	NT	6.6%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243563	43 (0.930)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase

GGTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4243389‑4243539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCTCG  <  NC_002947/4243563‑4243420                                                                                                                                                                                                                                                                                                         GGTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGC                                                                                                                                                    >  8:114107/1‑149                                    AACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAG                                                                                                                 <  3:99385/149‑1                                                                                        CCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACC                                                                                                                                  <  1:124811/80‑1                                                                                        CCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACC                                                                                                                                  >  2:124811/1‑80                                                                                                                                                 CCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCT    >  1:179568/1‑149                                                                                                                                                 CCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCT    >  2:49010/1‑149                                                                                                                                                 CCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCACAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCT    >  4:196503/1‑149                                                                                                                                                   AGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCTCG  <  7:12270/149‑1                                                                                                                                                   AGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCTCG  <  8:25320/149‑1                                                                                                                                                      GCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGG        >  1:208133/1‑140                                                                                                                                                      GCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGG        <  2:208133/140‑1                                                                                                                                                       CGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCT             <  5:151727/134‑1                                                                                                                                                       CGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCT             >  6:151727/1‑134                                                                                                                                                                                                                                                                                                         GGTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4243389‑4243539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGATATCCAGCAGGAGCTGGACAAGCTGTTGTGGGCCGATCTGCTGGTGCTGAACTTCCCGATCTTCTGGTTCTCG  <  NC_002947/4243563‑4243420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.