New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243539	44 (0.900)	3 (0.060)	3/248	NT	6.6%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243563	43 (0.930)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase

CGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGT  >  NC_002947/4243420‑4243706                                                                                                                                                 |                                                                                                                                                cGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgct                                                                                                                                            <  8:25320‑M2/149‑6 (MQ=255) cGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgct                                                                                                                                            <  7:12270‑M2/149‑6 (MQ=255)   agaACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGTGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgctgg                                                                                                                                          >  4:196503‑M2/1‑142 (MQ=255)   agaACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgctgg                                                                                                                                          >  2:49010‑M2/1‑142 (MQ=255)   agaACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgctgg                                                                                                                                          >  1:179568‑M2/1‑142 (MQ=255)       ccAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgc                                                                                                                                               <  2:208133‑M2/140‑3 (MQ=255)       ccAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgc                                                                                                                                               >  1:208133‑M2/1‑138 (MQ=255)        cAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTaaa                                                                                                                                     <  7:114107/149‑1 (MQ=255)            agaTCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCg                                                                                                                                                <  5:151727‑M2/134‑2 (MQ=255)            agaTCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCg                                                                                                                                                >  6:151727‑M2/1‑133 (MQ=255)             gaTCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGt                                                                                                                                   <  2:134777/146‑1 (MQ=255)             gaTCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGt                                                                                                                                   >  1:134777/1‑146 (MQ=255)             gaTCGGGAAGTTCAGCACCAACAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCAt                                                                                                                                >  4:118314/1‑149 (MQ=255)              aTCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATc                                                                                                                               <  2:80930/149‑1 (MQ=255)                   gAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCAc                                                                                                                          >  2:304465/1‑149 (MQ=255)                    aaGTTCAGCACCAACAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACt                                                                                                                         <  3:118314/149‑1 (MQ=255)                       ttCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGc                                                                                                                      >  2:127154/1‑149 (MQ=255)                          aGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCAc                                                                                                                   >  8:90513/1‑149 (MQ=255)                          aGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCAc                                                                                                                   <  8:12270/149‑1 (MQ=255)                          aGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCAc                                                                                                                   >  2:123776/1‑149 (MQ=255)                             accaccAGATCGGCCCACAACAGCTTGTCCACCCCCTGCTGGATATCTCCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCgg                                                                                                                <  2:175568/149‑1 (MQ=255)                             aCCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATc                                                                                                                               <  6:281516/134‑1 (MQ=255)                             aCCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATc                                                                                                                               >  5:281516/1‑134 (MQ=255)                               cagcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGt                                                                                                              <  6:311485/149‑1 (MQ=255)                                 gcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTc                                                                                                            >  1:163515/1‑149 (MQ=255)                                         gCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCAt                                                                                                    <  1:123776/149‑1 (MQ=255)                                         gCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCAACGGCACTGGCCACCGGGTTCCAGCCCAt                                                                                                    >  3:31488/1‑149 (MQ=255)                                          cccACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATg                                                                                                   >  6:130803/1‑149 (MQ=255)                                          cccACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATg                                                                                                   <  5:130803/149‑1 (MQ=255)                                                   gCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAg                                                                                          <  7:90513/149‑1 (MQ=255)                                                        tCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCAACGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCAc                                                                                      <  4:31488/148‑1 (MQ=255)                                                          cAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGa                                                                                   <  1:304465/149‑1 (MQ=255)                                                          cAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGAGTACAAGTCACTGa                                                                                   >  5:156010/1‑149 (MQ=255)                                                           aGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGt                                                                                               <  2:198836/136‑1 (MQ=255)                                                           aGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGt                                                                                               >  1:198836/1‑136 (MQ=255)                                                              tCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGAACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTg                                                                               >  6:170580/1‑149 (MQ=255)                                                                 tgctgGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATgg                                                                                                  >  4:206103/1‑127 (MQ=255)                                                                 tgctgGACATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATgg                                                                                                  <  3:206103/127‑1 (MQ=255)                                                                                      gCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGa                                                        <  7:25320/148‑1 (MQ=255)                                                                                        aCCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCa                                                                                       <  4:291291/115‑1 (MQ=255)                                                                                        aCCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCa                                                                                       >  3:291291/1‑115 (MQ=255)                                                                                               ttGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGaa                                                       <  5:251701/140‑1 (MQ=255)                                                                                               ttGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGaa                                                       >  6:251701/1‑140 (MQ=255)                                                                                                     cccTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTACAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTg                                        >  3:58814/1‑149 (MQ=255)                                                                                                                ctCCAGCGCATACACGAGGTACTCGGGG‑TTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctggtgctgaacttcccgatcttctggtt                             <  3:99385‑M2/149‑117 (MQ=255)                                                                                                                 tCCAGCGCATACACGAGGTACTCGGGGTTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAggg                             >  1:17381/1‑149 (MQ=255)                                                                                                                   cAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTc                                                                                        <  1:117166/87‑1 (MQ=255)                                                                                                                   cAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTc                                                                                        >  2:117166/1‑87 (MQ=255)                                                                                                                       gcATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGt                      <  6:156010/149‑1 (MQ=255)                                                                                                                            cacGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACt                                                                                     <  4:176780/81‑1 (MQ=255)                                                                                                                            cacGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACt                                                                                     >  3:176780/1‑81 (MQ=255)                                                                                                                                 ggTACTCGGGG‑TTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctgg                                                                                 >  2:124811‑M2/1‑16 (MQ=255)                                                                                                                                 ggTACTCGGGG‑TTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctgg                                                                                 <  1:124811‑M2/80‑65 (MQ=255)                                                                                                                                      tCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTc                                                 >  7:231993/1‑107 (MQ=255)                                                                                                                                      tCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTc                                                 <  8:231993/107‑1 (MQ=255)                                                                                                                                      tCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTAAAAGACACTGACCTGCACCTGATGACCTTGGCCACGGAAGGTTTCCACAGCCTGGTCACGCACGGCTGCAGTGAACTATTGCGGtac       >  4:122167/1‑147 (MQ=255)                                                                                                                                              tctcGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGt  >  6:233002/1‑147 (MQ=255)                                                                                                                                                tcGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCggg    >  3:259154/1‑143 (MQ=255)                                                                                                                                                tcGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCggg    <  4:259154/143‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                CGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGG‑TTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGT  >  NC_002947/4243420‑4243706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.