New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4441130	47 (0.960)	3 (0.070)	3/244	NT	6.3%	intergenic (+64/+108)	PP_3938/nicP‑II	hypothetical protein/porin‑like protein
	?	NC_002947	= 4441193	46 (1.010)					intergenic (+127/+45)	PP_3938/nicP‑II	hypothetical protein/porin‑like protein

GGAAGCGGATCAACTCACTGGCCCGATCGCGCGGCTTGAGGAGGCCATTTGGCAGCTGCCGGATAGCCTGAAGCCCGACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4440976‑4441130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaaccttATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTCGTGCAAGGGGATGGGTAGGCCTGAGCTGTGGAGCATGACAATGGCTCTTGCAGGTCACTGCAAGGTGT  <  NC_002947/4441193‑4441053                                                                                                                                                                                                                                                                                                          GGAAGCGGATCAACTCACTGGCCCGATCGCGCGGCTTGAGGAGGCCATTTGGCAGCTGCCGGATAGCCTGAAGCCCGACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAG                                                                                                                                                      >  4:129909/1‑148                                                                   CCTGAAGCCCGACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAG                                                                                   >  6:292295/1‑149                                                                              ACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGC                                                                        <  3:161433/149‑1                                                                                ACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTC                                                                      <  5:292295/149‑1                                                                                                                                                    GCAACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTCGTGCAAGGGGATGGGTAGGCCTGAGCTGTGGAGCATGACAATGGCTCTTGCAGGTCACTGCAAGGTGT  >  2:42474/1‑149                                                                                                                                                      AACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTCGTGCAAGGGGATGGGTAGGCCTGAGCTGTGGAGCATGACAATGGCTCTTGCAG                 <  3:213712/132‑1                                                                                                                                                      AACCTTATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTCGTGCAAGGGGATGGGTAGGCCTGAGCTGTGGAGCATGACAATGGCTCTTGCAG                 >  4:213712/1‑132                                                                                                                                                                                                                                                                                                          GGAAGCGGATCAACTCACTGGCCCGATCGCGCGGCTTGAGGAGGCCATTTGGCAGCTGCCGGATAGCCTGAAGCCCGACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4440976‑4441130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaaccttATGCTGCGAAGAAGCAATAGCTGCCTAAGGCAGTCGTTTGCCTTACCGCGCTCTTCGCAGCGCAAGGTTGCTCGTGCAAGGGGATGGGTAGGCCTGAGCTGTGGAGCATGACAATGGCTCTTGCAGGTCACTGCAAGGTGT  <  NC_002947/4441193‑4441053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.