New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4441130	47 (0.960)	3 (0.070)	3/244	NT	6.3%	intergenic (+64/+108)	PP_3938/nicP‑II	hypothetical protein/porin‑like protein
	?	NC_002947	= 4441193	46 (1.010)					intergenic (+127/+45)	PP_3938/nicP‑II	hypothetical protein/porin‑like protein

ACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTGCGCACCCGTATCC  >  NC_002947/4441053‑4441332                                                                                                                                             |                                                                                                                                            acacCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggttgc                                                                                                                                     >  2:42474‑M2/1‑141 (MQ=255)        gCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGa                                                                                                                               <  2:299750/148‑1 (MQ=255)            tGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGcc                                                                                                                           >  8:50607/1‑148 (MQ=255)                cTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggtt                                                                                                                                       >  4:213712‑M2/1‑126 (MQ=255)                cTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggtt                                                                                                                                       <  3:213712‑M2/132‑7 (MQ=255)                  gCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTgg                                                                                                                    >  3:220944/1‑149 (MQ=255)                  gCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACAACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTgg                                                                                                                    >  5:251695/1‑149 (MQ=255)                        gCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCgg                                                                                                              <  3:76256/149‑1 (MQ=255)                        gCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCgg                                                                                                              <  2:270920/149‑1 (MQ=255)                            ttGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCa                                                                                                          >  4:131984/1‑149 (MQ=255)                              gTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCAc                                                                                                         <  5:122572/148‑1 (MQ=255)                                       cacaGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                >  3:196671/1‑148 (MQ=255)                                       cacaGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACAACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                <  6:251695/148‑1 (MQ=255)                                        acaGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                >  5:260732/1‑147 (MQ=255)                                        acaGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                >  6:91804/1‑147 (MQ=255)                                            cTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGATCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCgg                                                                                                              <  1:185318/129‑1 (MQ=255)                                            cTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCgg                                                                                                              >  2:185318/1‑129 (MQ=255)                                               aGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAacac                                                                                        <  5:91804/148‑1 (MQ=255)                                                   cTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTTCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGa                                                                                   <  7:56557/149‑1 (MQ=255)                                                   cTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGa                                                                                   >  4:158026/1‑149 (MQ=255)                                                            cccTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAAc                                                                          <  4:184455/149‑1 (MQ=255)                                                             ccTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGTCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACt                                                                         >  2:212759/1‑149 (MQ=255)                                                              cTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCAc                                                                                                         >  2:9350/1‑116 (MQ=255)                                                              cTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCAc                                                                                                         <  1:9350/116‑1 (MQ=255)                                                              cTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATccc                                                                                                  <  8:216687/123‑1 (MQ=255)                                                              cTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATccc                                                                                                  >  7:216687/1‑123 (MQ=255)                                                                     gAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggttgctcgtgcaaggggatgggtaggcctgagctgtggagcatgacaatggctcttgcaggtcactgcaaggt                                                                 <  5:292295‑M2/149‑77 (MQ=255)                                                                      aGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGTCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCaa                                                                <  1:212759/149‑1 (MQ=255)                                                                       gCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggttgctcgtgcaaggggatgggtaggcctgagctgtggagcatgacaatggctcttgcaggtcactgcaaggtgt                                                               <  3:161433‑M2/149‑79 (MQ=255)                                                                         aaCCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCg                                                             <  3:131984/149‑1 (MQ=255)                                                                            cTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGGACACCTTGATCGTGTAACTCAGAATCAAGCGGtt                                                          <  6:260732/149‑1 (MQ=255)                                                                            cTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGtt                                                          <  7:50607/149‑1 (MQ=255)                                                                                  cTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATaaggttgctcgtgcaaggggatgggtaggcctgagctgtggagcatgacaatggctcttgcaggtcactgcaaggtgtcgggcttcagg                                                    >  6:292295‑M2/1‑60 (MQ=255)                                                                                     cGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCtat                                                 <  3:158026/149‑1 (MQ=255)                                                                                           gcgcGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGt                                           <  4:220944/149‑1 (MQ=255)                                                                                            cgcgGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTatat                                               <  2:4737/144‑1 (MQ=255)                                                                                            cgcgGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTatat                                               >  1:4737/1‑144 (MQ=255)                                                                                               cttaccgCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCgg                                       <  4:279111/143‑1 (MQ=255)                                                                                                   aGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGt                                   >  2:48738/1‑149 (MQ=255)                                                                                                    ggCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                >  1:147710/1‑87 (MQ=255)                                                                                                    ggCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCt                                                                                                <  2:147710/87‑1 (MQ=255)                                                                                                    ggCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGtt                                  >  4:170865/1‑149 (MQ=255)                                                                                                     gCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTg                                 >  3:241746/1‑149 (MQ=255)                                                                                                       aaaCGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCaa                                                                >  4:52827/1‑116 (MQ=255)                                                                                                       aaaCGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCaa                                                                <  3:52827/116‑1 (MQ=255)                                                                                                             cTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGGGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTtctc                                                       <  5:165565/119‑1 (MQ=255)                                                                                                             cTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGGGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTtctc                                                       >  6:165565/1‑119 (MQ=255)                                                                                                                      gCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCt                                                                                                                      <  2:139024/47‑1 (MQ=255)                                                                                                                      gCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCt                                                                                                                      >  1:139024/1‑47 (MQ=255)                                                                                                                         gCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTgcg             >  3:164813/1‑149 (MQ=255)                                                                                                                             ttGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTGCGCAcc         >  3:13558/1‑149 (MQ=255)                                                                                                                                  tcttcGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTGCGCACCCGTAt    >  6:133137/1‑149 (MQ=255)                                                                                                                                      cGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTGCGCACCCGTAccc  <  1:48738/147‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            ACACCTTGCAGTGACCTGCAAGAGCCATTGTCATGCTCCACAGCTCAGGCCTACCCATCCCCTTGCACGAGCAACCTTGCGCTGCGAAGAGCGCGGTAAGGCAAACGACTGCCTTAGGCAGCTATTGCTTCTTCGCAGCATAAGGTTGCTTCGGAAGCCGAGCTGGCGCCGGGTCACCTATCCCCTCAGAACACCTTGATCGTGTAACTCAGAATCAAGCGGTTCTCATCTATATCTGTCCGGTAGTTGGAGCGCGCCATCACATTGCGCACCCGTATCC  >  NC_002947/4441053‑4441332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.