New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4642860 =	51 (1.040)	4 (0.090)	4/246	NT	8.3%	coding (803/897 nt)	PP_4107	LysR family transcriptional regulator
	?	NC_002947	4642900 =	41 (0.890)					coding (843/897 nt)	PP_4107	LysR family transcriptional regulator

GCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4643012‑4642860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG  >  NC_002947/4642900‑4643046                                                                                                                                                                                                                                                                                                              GCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAG                                                                                                                                                         >  5:11614/1‑149               TTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGT                                                                                                                                                        <  5:99782/136‑1               TTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGT                                                                                                                                                        >  6:99782/1‑136                                    GCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAA                                                                                                                                                          <  5:104466/113‑1                                    GCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAA                                                                                                                                                          >  6:104466/1‑113                                                                                                               TTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGG                                                               >  7:207507/1‑129                                                                                                               TTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGG                                                               <  8:207507/129‑1                                                                                                                    CACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGACTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCA                                        >  7:204368/1‑147                                                                                                                       TTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGC                                    >  5:34946/1‑148                                                                                                                                                        CCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG  >  2:308245/1‑149                                                                                                                                                        CCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG  >  5:12622/1‑149                                                                                                                                                        CCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG  >  8:62747/1‑149                                                                                                                                                         CCAAGATCAGGGCCTTCGTGGAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCGAAAAACCGGCTAGATCACGAATCCATG  <  8:107323/148‑1                                                                                                                                                         CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCGAAAAACCGGCTAGATCACGAATCCATG  >  7:107323/1‑148                                                                                                                                                         CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGG                                                                                                                <  3:37529/38‑1                                                                                                                                                         CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGG                                                                                                                >  4:37529/1‑38                                                                                                                                                                                                                                                                                                              GCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4643012‑4642860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG  >  NC_002947/4642900‑4643046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.