New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4642860 = | 51 (1.040) | 4 (0.090) | 4/246 | NT | 8.3% | coding (803/897 nt) | PP_4107 | LysR family transcriptional regulator |
? | NC_002947 | 4642900 = | 41 (0.890) | coding (843/897 nt) | PP_4107 | LysR family transcriptional regulator |
ATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG > NC_002947/4642754‑4643046 | aTCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCaa < 4:232347/149‑1 (MQ=255) ccGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGAt > 2:38140/1‑148 (MQ=255) ccGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGAt > 4:162789/1‑148 (MQ=255) cGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGAt > 1:57834/1‑147 (MQ=255) cGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGAt < 4:7498/147‑1 (MQ=255) cGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCa < 6:255920/149‑1 (MQ=255) gCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTc < 5:302527/149‑1 (MQ=255) gCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTc < 5:298439/149‑1 (MQ=255) aTAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGt < 4:203795/149‑1 (MQ=255) aTAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGt < 7:106973/149‑1 (MQ=255) ccgctcctgccagaggccggggcaggtcaaatcaatcgccttcagccacccgctcccggatccactgcacgaaggccctgatcttgGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCaa > 7:207507‑M1/87‑129 (MQ=255) ccgctcctgccagaggccggggcaggtcaaatcaatcgccttcagccacccgctcccggatccactgcacgaaggccctgatcttgGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCaa < 8:207507‑M1/43‑1 (MQ=255) ccTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCGGt > 5:155374/1‑149 (MQ=255) cccGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCgg < 7:200906/149‑1 (MQ=255) cccGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCgg < 8:291728/149‑1 (MQ=255) ccGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCggg < 3:170584/149‑1 (MQ=255) gtggCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCGGTGGATCCGGGAGCGGGTg < 6:155374/147‑1 (MQ=255) gCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATcc > 3:180914/1‑133 (MQ=255) gCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATcc < 4:180914/133‑1 (MQ=255) gCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCgatt < 2:57834/149‑1 (MQ=255) gCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGAttt < 7:49837/149‑1 (MQ=255) gCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGAttt > 6:194736/1‑149 (MQ=255) cGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGAttt > 6:127127/1‑148 (MQ=255) cGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTg < 5:194736/149‑1 (MQ=255) gAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGa < 8:31579/149‑1 (MQ=255) ggCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGCGACGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATAGATTTGACCt < 4:22097/149‑1 (MQ=255) cAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCg > 7:155267/1‑120 (MQ=255) cAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCg < 8:155267/120‑1 (MQ=255) gtggtggCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGc < 3:162789/148‑1 (MQ=255) ggtggCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCctc < 7:229876/149‑1 (MQ=255) gtggCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCctct > 7:246107/1‑149 (MQ=255) ggACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAg > 1:63688/1‑149 (MQ=255) ccTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCtt > 7:161198/1‑149 (MQ=255) tgGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGccc > 3:234510/1‑149 (MQ=255) aagcaaCGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCcgcg > 6:11614/1‑148 (MQ=255) gcaaCGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAag < 5:127127/149‑1 (MQ=255) ttgggcacttcggccgcatgctcggcatgcgcgatgaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCgg > 7:207507‑M2/44‑129 (MQ=255) ttgggcacttcggccgcatgctcggcatgcgcgatgaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCgg < 8:207507‑M2/86‑1 (MQ=255) ggAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCg > 6:8598/1‑149 (MQ=255) ggAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCg < 2:63688/149‑1 (MQ=255) cacttcggccgcatgctcggcatgcgcgatgaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGACTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGca > 7:204368‑M2/39‑147 (MQ=255) ACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGaa < 5:99782‑M1/136‑1 (MQ=255) ACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGaa > 6:99782‑M1/1‑136 (MQ=255) CTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGc > 5:11614‑M1/1‑149 (MQ=255) ttcggccgcatgctcggcatgcgcgatgaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGc > 5:34946‑M2/36‑148 (MQ=255) TTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGc > 6:104466‑M1/1‑113 (MQ=255) TTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGc < 5:104466‑M1/113‑1 (MQ=255) aTCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGc > 6:188980/1‑120 (MQ=255) aTCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGc < 5:188980/120‑1 (MQ=255) gcgcATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGca < 2:275723/138‑1 (MQ=255) gcgcATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAgatcggg > 1:275723/1‑141 (MQ=255) tGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCaaaaaa > 7:23807/1‑149 (MQ=255) tGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCaaaaaa > 3:115394/1‑149 (MQ=255) ccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATg > 5:12622‑M2/3‑149 (MQ=255) ccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATg > 2:308245‑M2/3‑149 (MQ=255) ccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATg > 8:62747‑M2/3‑149 (MQ=255) cCAAGATCAGGGCCTTCGTGGAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCGAAAAACCGGCTAGATCACGAATCCATg < 8:107323‑M2/147‑1 (MQ=255) cCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCgg > 4:37529‑M2/2‑38 (MQ=255) cCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCgg < 3:37529‑M2/37‑1 (MQ=255) cCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCGAAAAACCGGCTAGATCACGAATCCATg > 7:107323‑M2/2‑148 (MQ=255) | ATCTCCGGCTGCGGCATAGCCCTGATTCCCCGCTATCTGGTGGCCGAAGAGCTGAGCGAAGGCAAGCTGGTGGTGGCCTGGGACCACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG > NC_002947/4642754‑4643046 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |