New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5040496	59 (1.210)	4 (0.090)	3/244	NT	6.7%	coding (8/1122 nt)	PP_4446	group II intron‑encoding maturase
	?	NC_002947	= 5040543	57 (1.250)					intergenic (‑40/‑81)	PP_4446/PP_5680	group II intron‑encoding maturase/Cro/CI family transcriptional regulator

CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5040340‑5040496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccgatCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  <  NC_002947/5040543‑5040402                                                                                                                                                                                                                                                                                                             CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGT                                                                                                                                                        >  6:137013/1‑149  CATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTT                                                                                                                                                       <  2:302119/149‑1     ACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCC                                                                                                                                                    >  1:285177/1‑149       GAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCACCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCC                                                                                                                                                   >  7:234158/1‑148         GAAACCCAGAAAGTCCTCTTCATAAATCGCATTCCGAACGGTAACGACTGCCTGCTGTCCGAGCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCGTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGAT                                                                                                                                                <  2:253726/149‑1                                                         TGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCACCGGAAGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGAGATGGCGTAGCCCGATCTCACTGGCCCCCTGAGTCGGCAGCCCCGTCAGCACATCTTTGAGAT                                                                                                 >  5:8621/1‑148                                                               CTGTACGATCTTGTCCTCAAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCAGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATACCGa                                                                                            <  6:8621/147‑2                                                                         TTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGC                                                                                                                                                     <  3:179441/80‑1                                                                         TTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGC                                                                                                                                                     >  4:179441/1‑80                                                                                                                        TTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATC                                                                                              >  7:256563/1‑88                                                                                                                        TTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATC                                                                                              <  8:256563/88‑1                                                                                                                                                        CCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  >  4:155030/1‑148                                                                                                                                                        CCCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  >  8:155308/1‑148                                                                                                                                                         CCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGC                           <  3:200108/122‑1                                                                                                                                                         CCGATCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGC                           >  4:200108/1‑122                                                                                                                                                                                                                                                                                                             CCATACGAGAAACCCAGAAAGTCCTCTTCATAAATCGCATTCAGAACGGTAACGACTGCCTGCTGTACGATCTTGTCCTCCAGAGAGGCAATGCCCAGCGGACGCTGCCTGCCGTCGGCTTTGGGAATGTAGACCCGCCGCGATGGCGTTGCCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5040340‑5040496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccgatCTCACTGGCCCGCTGCGTCGGCAGCCGCGTCAGCACATCTTTGAGATATCGGGCAACGCCATCGCGGCGGGTCTACATTCCCAAAGCCGACGGCAGGCAGCGTCCGCTGGGCATTGCCTCTCTGGAGGACAAGATCGTACAG  <  NC_002947/5040543‑5040402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.