New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5281862 =	48 (0.980)	5 (0.110)	5/248	NT	9.8%	coding (479/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta
	?	NC_002947	5281910 =	47 (1.020)					coding (431/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta

GCCACAAGAACGATCGCTACCTGGCGCCCCTGGACCCGAACTTCGGTGGTGTTGGGCGGTGTCTGACCGACCGTGACGGCTATTACAGCTTCCGCACCATCAAGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282012‑5281862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGTGGCGATAGCGGCCGCCGGCGTTGGCTTGCCACATCTCCACC  >  NC_002947/5281910‑5282050                                                                                                                                                                                                                                                                                                      GCCACAAGAACGATCGCTACCTGGCGCCCCTGGACCCGAACTTCGGTGGTGTTCGGCGGTGTCTGACCGACCGTGACGGCTATTACAGCTTCCTCACCATCAACCCGGGCCCGTACCCATCGCGCAACGCCCCGAACGACTGACGCCCG                                                                                                                                                 >  8:124474/1‑149                                                                                                 CCATCAAGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGT                                                 >  4:227968/1‑149                                                                                                   ATCAAGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTC                                               >  6:969/1‑149                                                                                                       AGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGC                                                                 <  7:184813/127‑1                                                                                                       AGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGC                                                                 >  8:184813/1‑127                                                                                                                CGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGTGGCGATAGC                                  <  3:227968/149‑1                                                                                                                                                 GCCCGGCTTGATGGTGCGGAGGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGT                                           <  3:9842/107‑1                                                                                                                                                 GCCCGGCTTGATGGTGCGGAGGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGT                                           >  4:9842/1‑107                                                                                                                                                 GCCCGGCTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGTGGCGATAGCGGCCGCCGGCGTTGGCTTGCCACATCTCCACC  >  8:239301/1‑148                                                                                                                                                                                                                                                                                                      GCCACAAGAACGATCGCTACCTGGCGCCCCTGGACCCGAACTTCGGTGGTGTTGGGCGGTGTCTGACCGACCGTGACGGCTATTACAGCTTCCGCACCATCAAGCCGGGCCCGTACCCATGGCGCAACGGCCCGAACGACTGGCGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282012‑5281862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcTTGATGGTGCGGAAGCTGTAATAGCCGTCACGGTCGGTCAGACACCGCCCAACACCACCGAAGTTCGGGTCCAGGGGCGCCAGGTAGCGATCGTTCTTGTGGCGATAGCGGCCGCCGGCGTTGGCTTGCCACATCTCCACC  >  NC_002947/5281910‑5282050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.