New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5432710 =	52 (1.060)	3 (0.060)	3/254	NT	5.1%	intergenic (+45/+25)	PP_5713/hrpB	hypothetical protein/ATP‑dependent helicase HrpB
	?	NC_002947	5432794 =	62 (1.310)					coding (2470/2529 nt)	hrpB	ATP‑dependent helicase HrpB

CAGTTTCTGGCGCACGACCTATGCCGAGGTGAAGAAAGACCTGAAAGGGCGATATCCGAAGCACTACTGGCCGGACGACCCTCTGGTGGCCGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5432861‑5432710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGTCGTGCGCCAGAAACTGGCCAGGTCCTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGAT  >  NC_002947/5432794‑5432941                                                                                                                                                                                                                                                                                                              CAGTTTCTGGCGCACGACCTATGCCGATGGGAAGAAAGACCTGAAAGGGCGATATCCGAAGCACTACTGGCCGGACGACCCTCTGGTGGCCGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAG                                                                                                                                                         <  7:285747/149‑1                                                               ACTACTGGCCGGACGACCCTCTGGTGGCCGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGTCGTGCGC                                                                                           >  8:288410/1‑149                                                                  ACTGGCCGGACGACCCTCTGGTGGCCGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGTCGTGCGC                                                                                           >  1:120118/1‑146                                                                                              GGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGTCGTGCGCCAGAAACTGGCCAGGTCCTGGGTCACCTGCA                                                            <  7:288410/149‑1                                                                                                                                                     GGCCAGTAGTGCTGCGGATAGCGCCCTTGCAGGTCTTGCTTCACCTCGGCATAGGTCGGGCGCCAGAAACTGGCCAGGTCCTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGC     <  8:285747/149‑1                                                                                                                                                        CAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGGCGTGCGCCAGAAACTGGCCAGGTCCTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGAT  <  4:175036/149‑1                                                                                                                                                                                                                                                                                                              CAGTTTCTGGCGCACGACCTATGCCGAGGTGAAGAAAGACCTGAAAGGGCGATATCCGAAGCACTACTGGCCGGACGACCCTCTGGTGGCCGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5432861‑5432710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGTAGTGCTTCGGATATCGCCCTTTCAGGTCTTTCTTCACCTCGGCATAGGTCGTGCGCCAGAAACTGGCCAGGTCCTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGAT  >  NC_002947/5432794‑5432941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.