New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5667231	42 (0.860)	3 (0.060)	3/250	NT	5.9%	intergenic (+9/+62)	nhaP/PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
	?	NC_002947	= 5667272	56 (1.200)					intergenic (+50/+21)	nhaP/PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase

GGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTGCGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5667114‑5667231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggCCTCTTCGCGGGTTCACCCGCGAATGGGCCGCAAAGCGGCCCCGGCATTCT  <  NC_002947/5667272‑5667222                                                                                                                                                                           GGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTGCGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGCCTCTTCGCGGGTTCACCCGCGAATGGGCCG                      >  1:184270/1‑149                    TCGATCACCTACATCGTGGTGTGGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTGCGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGCCTCTTCGCGGGTTCACCCGCGAATGGGCCGCAAAGCGGCCCCGGCATTC   <  8:223068/149‑1                      GATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTGCGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGCCTCTTCGCGGGTTCACCCGCGAATGGGCCGCAAAGCGGCCCCGGCATTCT  <  2:184270/148‑1                                                                                                                                                                           GGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTGCGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5667114‑5667231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggCCTCTTCGCGGGTTCACCCGCGAATGGGCCGCAAAGCGGCCCCGGCATTCT  <  NC_002947/5667272‑5667222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.