New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5667231	42 (0.860)	3 (0.060)	3/250	NT	5.9%	intergenic (+9/+62)	nhaP/PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
	?	NC_002947	= 5667272	56 (1.200)					intergenic (+50/+21)	nhaP/PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase

GCACTTGCACTGTCGCTACCGCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCTCGCCC  >  NC_002947/5667085‑5667377                                                                                                                                                    |                                                                                                                                                   gCACTTGCACTGTCGCTACCGCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑TGCAAGGTCAGCGCCCAGCCTTGAGAATGCCgggg                                                                                                                                                  <  3:42264/149‑1 (MQ=255)   aCTTGCACTGTCGCTACCGCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACAACGAGGTGTTGTCGTCGATTATGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCCGGGcc                                                                                                                                                >  2:242651/1‑149 (MQ=255)               gCTACCGCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGccc                                                                                                                                    <  5:12489/149‑1 (MQ=255)                     gCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTcgc                                                                                                                              >  6:297720/1‑149 (MQ=255)                         ggCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGt                                                                                                                          <  1:206686/149‑1 (MQ=255)                          gggatgtaCGGGACCTTCTTCTTTCGATGACCTACATCGTGGTGTTGGCGTCGATTCTTGGGCAGGGGGTGACCCTTTGGCGGGTGGTGAAGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGt                                                                                                                          <  1:242651/142‑1 (MQ=255)                              ggAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGcctcttcgcgggttcacccgcgaatgggccg                                                                                                                     >  1:184270‑M1/1‑118 (MQ=255)                               gAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAAccc                                                                                                                    >  3:42906/1‑149 (MQ=255)                               gAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAAccc                                                                                                                    >  4:141641/1‑149 (MQ=255)                                       ccTGCTGCTGTCGATCTCCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAagag                                                                                                            <  2:168944/149‑1 (MQ=255)                                                 tCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAg                                                                                                  >  3:185171/1‑149 (MQ=255)                                                 tCGATCACCTACATCGTGGTGTGGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGcctcttcgcgggttcacccgcgaatgggccgcaaagcggccccggcattc                                                                                                  <  8:223068‑M1/149‑51 (MQ=255)                                                   gATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGcctcttcgcgggttcacccgcgaatgggccgcaaagcggccccggcattct                                                                                                 <  2:184270‑M1/148‑52 (MQ=255)                                                   gATCACATACATCGTGGTGTTGTCGTCTATTCAGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCTGCGCCGCTTTGCGGCCCATTCGCGGGTGAACACGCTAAGAGGACCGCACAgg                                                                                                 >  5:248813/1‑148 (MQ=255)                                                         cTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAAc                                                                                             >  5:110936/1‑146 (MQ=255)                                                         cTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCa                                                                                           <  6:110936/148‑1 (MQ=255)                                                         cTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAg                                                                                          >  5:312190/1‑149 (MQ=255)                                                         cTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACAAg                                                                                          >  7:135718/1‑149 (MQ=255)                                                             aTCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTc                                                                                      >  5:115605/1‑149 (MQ=255)                                                             aTCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTc                                                                                      <  2:252332/149‑1 (MQ=255)                                                                   gtgtTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTc                                                                                 <  4:42906/148‑1 (MQ=255)                                                                      ttgtCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACt                                                                             <  5:297720/149‑1 (MQ=255)                                                                      ttgtCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCCATTTGCGGCCCATACGCGGGTGAACCCGCGAAAAGGCCGGAACAGCCAACAAGGGACTTTTCGaat                                                                             >  6:183209/1‑147 (MQ=255)                                                                           gtcgATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCg                                                                         >  8:284239/1‑148 (MQ=255)                                                                           gtcgATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCg                                                                         >  4:55138/1‑148 (MQ=255)                                                                           gtcgATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCg                                                                         >  8:220255/1‑148 (MQ=255)                                                                              gATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATc                                                                     >  8:261944/1‑149 (MQ=255)                                                                                 tCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCgg                                                                  >  1:136413/1‑149 (MQ=255)                                                                                                  gCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACg                                                  >  4:139736/1‑148 (MQ=255)                                                                                                     ttGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACt                                              <  2:136413/149‑1 (MQ=255)                                                                                                       gggCGGGTGGTG‑CGCAAGGGCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACtt                                             <  3:208281/148‑1 (MQ=255)                                                                                                             ggggtg‑CGCAAGGTCAGCGCCCAGGCGTGCTAATGCCCGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCg                                      <  5:183209/147‑1 (MQ=39)                                                                                                                    cgcAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTgcgc                                >  7:84473/1‑149 (MQ=255)                                                                                                                        aGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCCGCACGTACTTGAGCTCGGTGCGCCCAt                            >  6:280238/1‑149 (MQ=255)                                                                                                                          gTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATgg                          <  5:55118/149‑1 (MQ=255)                                                                                                                          gTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATgg                          >  6:55118/1‑149 (MQ=255)                                                                                                                           tCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATggg                         >  7:277725/1‑149 (MQ=255)                                                                                                                               ctgccAGCCTTGAGAATGGCGGGGCCGCTTTGTGGCCCATTCGCGTGTGTACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCGCATGGGCt                       <  6:248813/144‑1 (MQ=255)                                                                                                                               cgcCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGc                     <  6:115605/149‑1 (MQ=255)                                                                                                                               cgcCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGc                     <  3:139736/149‑1 (MQ=255)                                                                                                                                  ccAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTa                                                >  2:260602/1‑119 (MQ=255)                                                                                                                                  ccAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTa                                                <  1:260602/119‑1 (MQ=255)                                                                                                                                    aGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTTGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCa                <  6:312190/149‑1 (MQ=255)                                                                                                                                       cTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGc             >  5:107773/1‑149 (MQ=255)                                                                                                                                       cTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGc             <  8:163844/149‑1 (MQ=255)                                                                                                                                           agaATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGccggcattctcaaggctgggcgctgaccttgcgcaccacccgcccaatgctcaacccctgcaccagaatcgacgacaacaccacgatgtaggtgatc          <  2:184270‑M2/148‑98 (MQ=255)                                                                                                                                            gaATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGccggcattctcaaggctgggcgctgaccttgcgcaccacccgcccaatgctcaacccctgcaccagaatcgacgaccacaccacgatgtaggtgatcga        <  8:223068‑M2/149‑100 (MQ=255)                                                                                                                                             aaTGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCt       >  6:158086/1‑149 (MQ=255)                                                                                                                                              gcgaatgggCCGCAAAGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCACCCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCTc      >  1:284504/7‑149 (MQ=255)                                                                                                                                               tGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCTCg     >  5:146714/1‑149 (MQ=255)                                                                                                                                                 aatgggCCGCAAAGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCCAGCCATCCTCGcc   >  1:221493/4‑149 (MQ=255)                                                                                                                                                  cGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCTCGccc  <  4:185171/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCACTTGCACTGTCGCTACCGCTGGGCGAGGAACGGGACCTGCTGCTGTCGATCACCTACATCGTGGTGTTGTCGTCGATTCTGGTGCAGGGGTTGAGCATTGGGCGGGTGGTG‑CGCAAGGTCAGCGCCCAGCCTTGAGAATGCCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACCAGGGTCTATTCGACTGCCGAATCCGGGAACTGGTCCTGCACGTACTTGATCTCGGTGCGCCCATGGGCTGCCGGCAAGCCATCCTCGCCC  >  NC_002947/5667085‑5667377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.