| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5783118 = | 51 (1.040) | 3 (0.060) | 3/252 | NT | 5.5% | coding (1593/3309 nt) | kefA | intermediate mechanosensitive channel protein |
| ? | NC_002947 | 5783188 = | 54 (1.150) | coding (1663/3309 nt) | kefA | intermediate mechanosensitive channel protein | |||||
CCAGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5783269‑5783118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgcAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGCCTGGCTGGTGTTCTACACCGCCTACCGTATCCTCGCACCCGGTGGCGTGGCGGAAGTCCACTTCCGCTGG > NC_002947/5783188‑5783331 CCAGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTG > 1:169961/1‑149CCAGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTG > 4:266428/1‑149 CAGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGT < 3:210581/149‑1 AGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTG > 3:278477/1‑149 TAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTGCAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGC > 1:153622/1‑149 CTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTGCAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGCCTG > 2:38430/1‑149 CGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTGCAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGCCTGGCTGGTGT < 1:38430/149‑1 TGCAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGCCTGGCTGGTGTTCTACACCGCCTACCGTATCCTCGCACCCGGTGGCGTGGCGGAAGTCCACTTCCGCTGG < 4:300083/147‑1 CCAGCCAGGCCTGGGCCAGCTGCCAGAGTGCGGCGCCCAGGTTGGCGTTTTGCCCGCGAGCATCGATCTGCAAGGCATAGCTGCACAGCGCCAGGCCAAGGCTGACCGGCATCGCCAGCAGAATGTTGATAAGGATTGCCTGGGGCGTGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5783269‑5783118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgcAGCTATGCCTTGCAGATCGATGCTCGCGGGCAAAACGCCAACCTGGGCGCCGCACTCTGGCAGCTGGCCCAGGCCTGGCTGGTGTTCTACACCGCCTACCGTATCCTCGCACCCGGTGGCGTGGCGGAAGTCCACTTCCGCTGG > NC_002947/5783188‑5783331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |