| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5854949 | 48 (0.980) | 4 (0.090) | 4/252 | NT | 7.1% | coding (969/1392 nt) | tcyP | sodium/cystine symporter |
| ? | NC_002947 | = 5855010 | 58 (1.230) | coding (1030/1392 nt) | tcyP | sodium/cystine symporter | |||||
CATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5854817‑5854949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGCGGGTTTGTGCCTCGATGTTCAGCGGAATGCTGGCGGCGCTGGAGCGGCTGGTGAAGGCGAAGGTCAGCACCGGCCACACCTT < NC_002947/5855010‑5854863 CATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTTCTGGCCAATGGTGGT > 3:130600/1‑149 GCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCC > 3:237567/1‑147 TGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGC < 4:237567/149‑1 TGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGCGG < 4:130600/149‑1 GCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGCGGGTTTGTGCCTCGATGTTCAGCGGAATGCTGGCGGCGCTGGAGCGGCTGGTGAAGGCGAAGGTCAGCACCGGCCACA < 8:252322/149‑1 TTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGCGGGTTTGTGCCTCGATGTTCAGCGGAATGCTGGCGGCGCTGGAGCGGCTGGTGAAGGCGAAGGTCAGCACCGGCCACACCTT < 7:196998/149‑1 CATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5854817‑5854949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACGCCCAGACGGCGGGTTTGTGCCTCGATGTTCAGCGGAATGCTGGCGGCGCTGGAGCGGCTGGTGAAGGCGAAGGTCAGCACCGGCCACACCTT < NC_002947/5855010‑5854863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |