New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5854949 | 48 (0.980) | 4 (0.090) | 4/252 | NT | 7.1% | coding (969/1392 nt) | tcyP | sodium/cystine symporter |
? | NC_002947 | = 5855010 | 58 (1.230) | coding (1030/1392 nt) | tcyP | sodium/cystine symporter |
GTGGTGCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCG > NC_002947/5854806‑5855097 | gtggtgCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTggg < 5:181583/149‑1 (MQ=255) gCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGGGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCAGTCCGCTGAACATCGAGGCACAACCCCGCCGTCTGGGCGTGc > 8:8846/1‑149 (MQ=255) cACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCCGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGcc < 7:163305/149‑1 (MQ=255) aCGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCg > 6:80672/1‑149 (MQ=255) cGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGc < 3:9496/149‑1 (MQ=255) cGGCATCATCCTCGCCGCCACCGGCGTGAGACCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCg > 4:83276/1‑148 (MQ=255) gCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCaa < 7:153921/149‑1 (MQ=255) catcatCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTtctggccaatggtggt > 3:130600‑M1/1‑133 (MQ=255) tcCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAatcgatc < 5:80672/149‑1 (MQ=255) ccgccACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGc < 6:308215/149‑1 (MQ=255) ccACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCtt > 4:96158/1‑148 (MQ=255) aCCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAg < 3:230204/149‑1 (MQ=255) gAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGt > 2:167666/1‑149 (MQ=255) cTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGcac < 3:83276/149‑1 (MQ=255) cttcCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTg > 4:72127/1‑149 (MQ=255) ccGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGc < 2:243314/148‑1 (MQ=255) cGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGc > 6:271682/1‑147 (MQ=255) gCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTtctggccaatggtggtgccgaacgatgcgctgaagctggcgatcgattgcggcacgcc > 3:237567‑M1/1‑89 (MQ=255) aaGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAa < 7:196998‑M2/149‑2 (MQ=255) tgtgGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTtctggccaatggtggtgccgaacgatgcgctgaagctggcgatcgattgcggcacgcccagacggc < 4:237567‑M1/149‑67 (MQ=255) tgtgGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAacggc < 8:252322‑M2/149‑6 (MQ=255) tgGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTtctggccaatggtggtgccgaacgatgcgctgaagctggcgatcgattgcggcacgcccagacggcgg < 4:130600‑M1/149‑69 (MQ=255) tgGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCt < 3:96158/148‑1 (MQ=255) gCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTgcg > 3:140255/1‑149 (MQ=255) cTGACCCTCCCCTTCACCCGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAAGCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGct < 8:137099/149‑1 (MQ=255) cTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCa > 4:144971/1‑149 (MQ=255) cACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGct > 4:81447/1‑135 (MQ=255) cACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGct < 3:81447/135‑1 (MQ=255) cAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTgg > 8:100089/1‑149 (MQ=255) cAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTgg > 7:34703/1‑149 (MQ=255) cAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTgg > 6:4182/1‑149 (MQ=255) ccGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCgg < 3:72127/149‑1 (MQ=255) cTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGa < 1:167666/149‑1 (MQ=255) ccAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCAt < 4:258432/136‑1 (MQ=255) ccAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCAt > 3:258432/1‑136 (MQ=255) cAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGAt < 5:4182/147‑1 (MQ=255) gcgcCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGct > 2:99703/1‑121 (MQ=255) gcgcCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGct < 1:99703/121‑1 (MQ=255) cgccgcCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCgg < 5:275919/128‑1 (MQ=255) cgccgcCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCgg > 6:275919/1‑128 (MQ=255) cgccAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCgcgc < 3:46058/149‑1 (MQ=255) ccAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTcgcgg > 7:52345/1‑146 (MQ=255) ccAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCca < 4:140255/149‑1 (MQ=255) tCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAg > 2:103581/1‑149 (MQ=255) ccGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAg < 8:196998/148‑1 (MQ=255) cGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGc < 7:100089/149‑1 (MQ=255) gCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCa > 4:16890/1‑149 (MQ=255) aaCATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGa > 4:217914/1‑149 (MQ=255) aTCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCCGCAGTAGGCATCGacac > 8:71105/1‑149 (MQ=255) aGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTc > 7:81741/1‑149 (MQ=255) ggCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCg < 7:252322/149‑1 (MQ=255) gCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTgg > 1:285512/1‑109 (MQ=255) gCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTgg < 2:285512/109‑1 (MQ=255) acaAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGAcc > 7:223493/1‑149 (MQ=255) ccgccgTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAacggcgggtttgtgcctcgatgttcagcggaatgctggcggcgctggagcggctggtgaaggcgaaggtcagcaccggcca < 4:130600‑M2/149‑82 (MQ=255) cgccgTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCtgtg > 2:140272/1‑149 (MQ=255) gccgTtctggccaatggtggtgccgaacgatgcgctgaagctggcgatcgattgcggcacgcccagacggcgggtttgtgcctcgatgttcagcggaatgctggcggcgctggagcggctggtgaaggcgaaggtcagcaccggccaca < 8:252322‑M1/149‑145 (MQ=255) gccgTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAacggcgggtttgtgcctcgatgttcagcggaatgctggcggcgctggagcggctggtgaaggcgaaggtcagcaccggccaca < 4:237567‑M2/149‑84 (MQ=255) gTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATc < 7:8846/149‑1 (MQ=255) ttctggccaatggtggtgccgaacgatgcgctgaagctggcgatcgattgcggcacgcccagacggcgggtttgtgcctcgatgttcagcggaatgctggcggcgctggagcggctggtgaaggcgaaggtcagcaccggccacacctt < 7:196998‑M1/149‑149 (MQ=255) | GTGGTGCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTGCGCTTCTTCCGCAAGGTGTGGCCGGTGCTGACCTTCGCCTTCACCAGCCGCTCCAGCGCCGCCAGCATTCCGCTGAACATCGAGGCACAAACCCGCCGTCTGGGCGTGCCGCAATCGATCGCCAGCTTCAGCGCATCGTTCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCG > NC_002947/5854806‑5855097 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |