| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5874548 = | 45 (0.920) | 5 (0.110) | 5/240 | NT | 9.5% | intergenic (‑40/+108) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
| ? | NC_002947 | 5874630 = | 54 (1.210) | intergenic (‑122/+26) | PP_5148/ilvA‑II | membrane protein/threonine deaminase | |||||
GTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5874704‑5874548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGC > NC_002947/5874630‑5874772 GTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAG > 2:51220/1‑149GTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAG > 6:272640/1‑149 GGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATCGCCCTTTCGCGGGCTTGCCCGCTCCCACACGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGCGTAAGCCC > 1:198663/1‑147 CTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATAAATTTGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATAAGCCCTACCATAGCCGCTCAGCCCAGGAACACTTTGAAGGC > 4:169827/1‑149 CCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCT > 4:163086/1‑149 GGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCAGAGAAAGGGCCATCAGCCCTAGATTAGCCGCTCCGCGCAGGAGCAGTTTCTAGTCCGGGTTTTGGGTCTCGTCaagg > 8:268843/1‑145 AGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGTGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTG < 3:169827/149‑1 GCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGG < 3:163086/149‑1 AAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGC > 4:89422/1‑149 CCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCC < 4:269488/149‑1 CCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCG > 7:287123/1‑149 GCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGC > 1:205489/1‑148 GTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5874704‑5874548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGC > NC_002947/5874630‑5874772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |