New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6019026 =	43 (0.880)	4 (0.090)	4/244	NT	9.4%	coding (174/1074 nt)	dadX	alanine racemase
	?	NC_002947	6019089 =	37 (0.810)					coding (111/1074 nt)	dadX	alanine racemase

CCTGATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6019182‑6019026 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtggccGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTG  >  NC_002947/6019089‑6019236                                                                                                                                                                                                                                                                                                                   CCTGATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTG                                                                                                                                                              >  4:147561/1‑149   TGATCGACCTCCAGGCCCTGCGCCCCAACTTCCGTCTGGCCCGTGAACTGACGGGTGCCCAAACCCGCGCCGTGATAAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGCAGCCGCCGGCTTTGCC                                                                                                                                                            >  4:250174/1‑149     ATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGT                                                                                                                                                          >  1:122861/1‑149     ATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGT                                                                                                                                                          <  3:147561/149‑1     ATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCC                                                                                                                                                            <  4:165798/147‑1        GACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGC                                                                                                                                                       <  3:51712/149‑1                                                                                               GGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGC                                                                                                <  7:112311/117‑1                                                                                               GGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGC                                                                                                >  8:112311/1‑117                                                                                                 CCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCG                                                              <  2:83262/149‑1                                                                                                 CCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTC                                                               >  1:83262/1‑148                                                                                                                                                        GTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAAT       <  8:117129/149‑1                                                                                                                                                         TGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATC      <  2:147960/149‑1                                                                                                                                                           GCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGG    <  7:176065/149‑1                                                                                                                                                             CGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTG  <  4:51712/149‑1                                                                                                                                                                                                                                                                                                                   CCTGATCGACCTCCAGGCCCTGCGCCACAACTACCGTCTGGCCCGTGAACTGACGGGTGCCAAAGCCCTCGCCGTGATCAAGGCCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6019182‑6019026 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtggccGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTG  >  NC_002947/6019089‑6019236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.