New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6019026 =	43 (0.880)	4 (0.090)	4/244	NT	9.4%	coding (174/1074 nt)	dadX	alanine racemase
	?	NC_002947	6019089 =	37 (0.810)					coding (111/1074 nt)	dadX	alanine racemase

TGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCT  >  NC_002947/6018878‑6019168                                                                                                                                                     |                                                                                                                                               caccgatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacg                                                                                                                                                <  4:51712‑M1/1‑1 (MQ=255)   gCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAgg                                                                                                                                               <  2:114651/148‑1 (MQ=255)   ccgatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGc                                                                                                                                              <  7:176065‑M1/3‑1 (MQ=255)     ttCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCa                                                                                                                                            >  1:149741/1‑149 (MQ=255)     ttCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCa                                                                                                                                            >  5:31398/1‑149 (MQ=255)     gatttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCa                                                                                                                                            <  2:147960‑M1/5‑1 (MQ=255)      atttcaacccgaaccaccataaggcagccgctatgcgtcccgcccgcgccctgatcgacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCAc                                                                                                                                           <  8:117129‑M1/6‑1 (MQ=255)       ccAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCAc                                                                                                                                           <  6:31398/148‑1 (MQ=255)          gTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGc                                                                                                                                        >  7:117129/1‑148 (MQ=255)          gTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGc                                                                                                                                        >  7:110228/1‑148 (MQ=255)                acaGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCg                                                                                                                                 >  6:141892/1‑149 (MQ=255)                   gCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCg                                                                                                                              <  8:110228/149‑1 (MQ=255)                   gCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCg                                                                                                                              <  6:210014/149‑1 (MQ=255)                     gAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGc                                                                                                                            >  2:205265/1‑149 (MQ=255)                          caccacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGcc                                                                                                                                             >  5:200821/1‑127 (MQ=255)                          caccacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGcc                                                                                                                                             <  6:200821/127‑1 (MQ=255)                          caccacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCg                                                                                                                              <  5:222895/142‑1 (MQ=255)                          caccacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCg                                                                                                                              >  6:222895/1‑142 (MQ=255)                           accacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCGGCGCCTCTGCGATGCAGGCCCCGGCAAAGCCGTCGGCTTCGGc                                                                                                                      >  8:274946/1‑149 (MQ=255)                           accacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGc                                                                                                                      >  8:37761/1‑149 (MQ=255)                           accacgcaccacAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGc                                                                                                                      >  8:199596/1‑149 (MQ=255)                                     acaGGTCGTGCTCGGCGATCAGCGCCAGTTCTCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGc                                                                                                             >  6:140901/1‑148 (MQ=255)                                          tCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGgc                                                                                                       >  1:147960/1‑149 (MQ=255)                                               cTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGgcgcag                                                                                                   <  7:146346/148‑1 (MQ=255)                                                       tCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGgcgcagcgagttcg                                                                                           >  1:281871/1‑142 (MQ=255)                                                       tCAGCGCCAGTTCGCTGGCTGCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGgcgcagc                                                                                                  <  2:281871/141‑1 (MQ=255)                                                             cgacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTgg                                                                                    <  2:83262‑M1/61‑1 (MQ=255)                                                              gacctccaggccctgcgccacaactaccgtctggcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTgg                                                                                    >  1:83262‑M1/88‑148 (MQ=255)                                                              cAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGc                                                                                   >  2:174472/1‑149 (MQ=255)                                                                    gCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAg                                                                              <  7:274946/148‑1 (MQ=255)                                                                    gCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAg                                                                              <  1:38823/148‑1 (MQ=255)                                                                      tGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCACGGCGCCGTGCGCTGCGCCCTg                                                                                     >  3:232447/1‑139 (MQ=255)                                                                      tGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCACGGCGCCGTGCGCTGCGCCCTg                                                                                     <  4:232447/139‑1 (MQ=255)                                                                          ttCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCgg                                                                       >  4:141463/1‑149 (MQ=255)                                                                             aaaaaaaCCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCt                                                                    >  7:49655/1‑149 (MQ=255)                                                                                aaaaCCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCGGTTCCAGCGCCTCTTCGATGCAGGCCACGGAAAAGCCGTCGGCTTCGGCCTAGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTg                                                                  >  3:128066/1‑148 (MQ=255)                                                                                      ttCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTa                                                                               >  8:213183/1‑129 (MQ=255)                                                                                      ttCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTa                                                                               <  7:213183/129‑1 (MQ=255)                                                                                          agcagcagTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAg                                                       <  3:156936/149‑1 (MQ=255)                                                                                               gcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGcc                                                                                  >  8:112311‑M1/55‑117 (MQ=255)                                                                                               gcccgtgaactgacgggtgccaaagccctcgccgtgatcaaggccgatgcctacGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGcc                                                                                  <  7:112311‑M1/63‑1 (MQ=255)                                                                                                 gTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTg                                                <  3:141463/149‑1 (MQ=255)                                                                                                  tACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTgg                                               <  2:149741/149‑1 (MQ=255)                                                                                                  tACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTgg                                               <  5:140901/149‑1 (MQ=255)                                                                                                                tACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCa                                 >  5:74136/1‑149 (MQ=255)                                                                                                                   cggcggCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACgg                              >  6:176222/1‑149 (MQ=255)                                                                                                                      cggcgCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGcc                           <  7:37761/149‑1 (MQ=255)                                                                                                                            gcAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACgg                     >  7:1407/1‑149 (MQ=255)                                                                                                                              aGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTa                   <  8:49655/149‑1 (MQ=255)                                                                                                                                  ccAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTtg               >  5:268789/1‑149 (MQ=255)                                                                                                                                   cAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCTCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTtgt              <  7:199596/149‑1 (MQ=255)                                                                                                                                   cAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTtgt              >  1:206815/1‑149 (MQ=255)                                                                                                                                    aGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTtgtg             >  8:176065/1‑149 (MQ=255)                                                                                                                                           ctTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTAACGGCCCAGACGGTAGTTGTGGCGCAgg      >  2:118589/1‑149 (MQ=255)                                                                                                                                            ttCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAg       <  1:205265/147‑1 (MQ=255)                                                                                                                                               gATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCt  >  4:215978/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               TGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCAGGCCACGGCAAAGCCGTCGGCTTCGGCCTCGAGGGCCAGGGCGCAGCGCACGGCGCCGTGGCCGTAGGCATCGGCCTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCT  >  NC_002947/6018878‑6019168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.