New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	383102 =	39 (0.800)	3 (0.060)	3/254	NT	7.3%	coding (65/303 nt)	PP_0319	hypothetical protein
	?	NC_002947	383137 =	38 (0.800)					coding (100/303 nt)	PP_0319	hypothetical protein

GAGCAGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACTGCTGGTGCTGGCTGCCCTTAACCTGTGCTCCAAGCAGGTT  >  NC_002947/382958‑383244                                                                                                                                                  |                                                                                                                                               gAGCAGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGcc                                                                                                                                             <  4:220509/148‑1 (MQ=255)   gCAGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCg                                                                                                                                           >  7:161507/1‑148 (MQ=255)    cAGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCg                                                                                                                                           >  4:97393/1‑147 (MQ=255)     aGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCACTCGACTATTCGATCAAGGCGCCCGaa                                                                                                                                         <  1:159943/149‑1 (MQ=255)         agagaagaACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGc                                                                                                                                      >  6:228819/1‑147 (MQ=255)          gagaagaACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAg                                                                                                                                   <  4:162713/149‑1 (MQ=255)                 aCGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGaaa                                                                                                                            <  5:228819/149‑1 (MQ=255)                         aCCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGcc                                                                                                                    >  6:206669/1‑149 (MQ=255)                          ccGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGc                                                                                                                     <  7:180774/147‑1 (MQ=255)                                   gCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTAc                                                                                                          <  2:174679/149‑1 (MQ=255)                                      aacctgcttggagcacaggttaagggcagccagcaccagcagtttgtcaccgatcaaggtcgggtactgacgcttggtctcgttaagggctttgttgagcatccgtacCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTAc                                                                                                          >  5:77936‑M1/109‑147 (MQ=255)                                          ggCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGGTCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCt                                                                                                   <  6:218148/149‑1 (MQ=255)                                           gCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTc                                                                                                  <  1:227925/149‑1 (MQ=255)                                           gCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTc                                                                                                  <  5:116513/149‑1 (MQ=255)                                            cttggagcacaggttaagggcagccagcaccagcagtttgtcaccgatcaaggtcgggtactgacgcttggtctcgttaagggctttgttgagcatccgtacCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACgg                                                                                                        <  3:10279‑M1/41‑1 (MQ=255)                                            cttggagcacaggttaagggcagccagcaccagcagtttgtcaccgatcaaggtcgggtactgacgcttggtctcgttaagggctttgttgagcatccgtacCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACgg                                                                                                        >  4:10279‑M1/103‑143 (MQ=255)                                                  tCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               <  8:141040/145‑1 (MQ=255)                                                  tCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               >  7:141040/1‑145 (MQ=255)                                                     aGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGAt                                                                                                      <  4:296872/135‑1 (MQ=255)                                                     aGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGAt                                                                                                      >  3:296872/1‑135 (MQ=255)                                                       cgcgcCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCtt                                                                                      <  8:161507/149‑1 (MQ=255)                                                          gcCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               >  5:48749/1‑137 (MQ=255)                                                          gcCAGCGCGGGCGTTGTTGGCGCATGAGACTCCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               <  6:48749/137‑1 (MQ=255)                                                            cAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACga                                                                                 <  5:206669/149‑1 (MQ=255)                                                                gcgGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGAcc                                                                             <  6:14734/149‑1 (MQ=255)                                                                   ggCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAg                                                                          >  5:151635/1‑149 (MQ=255)                                                                          ttgGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAATCCTGGCCCAGGCGGTACGGATGCTCAACAAAGccc                                                                                        >  1:26517/1‑128 (MQ=255)                                                                          ttgGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAATCCTGGCCCAGGCGGTACGGATGCTCAACAAAGccc                                                                                        <  2:26517/128‑1 (MQ=255)                                                                             gcgcATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               >  5:218273/1‑118 (MQ=255)                                                                             gcgcATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTcaac                                                                                               <  6:218273/118‑1 (MQ=255)                                                                                          cAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATc                                                     <  4:255298/147‑1 (MQ=255)                                                                                          cAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATc                                                     <  6:182032/147‑1 (MQ=255)                                                                                          cAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCg                                                    <  8:256271/148‑1 (MQ=255)                                                                                               gcagcCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGt                                                                   <  7:61849/128‑1 (MQ=255)                                                                                               gcagcCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGt                                                                   >  8:61849/1‑128 (MQ=255)                                                                                                  gcCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGAt                                                      >  3:212617/1‑138 (MQ=255)                                                                                                  gcCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGAt                                                      <  4:212617/138‑1 (MQ=255)                                                                                                          aTGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACtgctggtg                                   <  3:97393/149‑1 (MQ=255)                                                                                                                 gtcgATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGcc                                                                                                                    >  6:255824/1‑61 (MQ=255)                                                                                                                 gtcgATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGcc                                                                                                                    <  5:255824/61‑1 (MQ=255)                                                                                                                 gtcgATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGAt                                                      <  2:155394/123‑1 (MQ=255)                                                                                                                                     tATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACTGCTGGTGCTGGCTGCCCTTAACCTGTGCTcc           >  1:241408/1‑147 (MQ=255)                                                                                                                                         cGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACTGCTGGTGCTGGCTGCCCTTAACCTGTGCTCCAAGCa      <  5:250272/148‑1 (MQ=255)                                                                                                                                              aaGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACTGCTGGTGCTGGCTGCCCTTAACCTGTGCTCCAAGCAGGtt  >  7:281160/1‑147 (MQ=255)                                                                                                                                                  |                                                                                                                                               GAGCAGGAAGAGAAGAACGGCGCTACCGCAGCACGCATCCAGGCCTTGGTCGAGCGCGCCAGCGCGGGCGTTGTTGGCGCATGAGACTGCAGGAGCAGCCGATCAATGTCGTGTCGATCCTCGGCA‑TCGACTATTCGATCAAGGCGCCCGAAGGCCAGGAAGAAACCCTGGCCCAGGCGGTACGGATGCTCAACAAAGCCCTTAACGAGACCAAGCGTCAGTACCCGACCTTGATCGGTGACAAACTGCTGGTGCTGGCTGCCCTTAACCTGTGCTCCAAGCAGGTT  >  NC_002947/382958‑383244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.