New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	392752 =	50 (1.020)	5 (0.100)	5/256	NT	8.9%	intergenic (+11/‑64)	soxA/soxG	sarcosine oxidase subunit alpha/sarcosine oxidase subunit gamma
	?	NC_002947	392785 =	54 (1.130)					intergenic (+44/‑31)	soxA/soxG	sarcosine oxidase subunit alpha/sarcosine oxidase subunit gamma

CCATGGGTGTGGTCAAAGGCGGCCTCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCATGCCGAC  >  NC_002947/392605‑392890                                                                                                                                                    |                                                                                                                                           ccATGGGTGTGGTCAAAGGCGGCCTCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATgg                                                                                                                                           >  7:265621/1‑149 (MQ=255)   gcctgcgttcttgcggcctttgcctaccaggctggccaggtcggcatggtgcagtggcgactgggctttggcctcggctcaggcgttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcaggg                                                                                                                                           <  7:200283‑M1/2‑1 (MQ=255)       gtgtGGTCAAAGGCGGCCTCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGgcggcg                                                                                                                                      >  7:35660/1‑148 (MQ=255)          tgGTCAAAGGCGGCCTCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAg                                                                                                                                   <  4:93432/148‑1 (MQ=255)                         tCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGgctg                                                                                                                   >  6:117684/1‑149 (MQ=255)                            aGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGgctgcgc                                                                                                                >  5:60/1‑149 (MQ=255)                             ccaggctggccaggtcggcatggtgcagtggcgactgggctttggcctcggcgccggggttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcagGGCAGCGCAGCCTGATTGCACGgctgcgct                                                                                                               >  6:206934‑M1/120‑149 (MQ=255)                                  tGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCt                                                                                                          <  2:188749/149‑1 (MQ=255)                                     gCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGAc                                                                                                       <  6:109148/149‑1 (MQ=255)                                     gCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGAc                                                                                                       <  4:135886/149‑1 (MQ=255)                                           gtgtCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGcc                                                                                                                                 <  2:118199/117‑1 (MQ=255)                                              tCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGaa                                                                                              <  5:117684/149‑1 (MQ=255)                                                   tCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGCATTCat                                                                                         >  8:200283/1‑148 (MQ=255)                                                      ccgcAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGaa                                                                                              <  4:88814/141‑1 (MQ=255)                                                      ccgcAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGaa                                                                                              >  3:88814/1‑141 (MQ=255)                                                      ccgcAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGACCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAgg                                                                                       >  8:59256/1‑148 (MQ=255)                                                       cgcAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAgg                                                                                       >  1:198306/1‑147 (MQ=255)                                                             cGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAg                                                                               <  8:265621/149‑1 (MQ=255)                                                               gATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAg                                                                                    >  6:293090/1‑142 (MQ=255)                                                               gATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAg                                                                                    <  5:293090/142‑1 (MQ=255)                                                                   gCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGa                                                                         <  3:34452/149‑1 (MQ=255)                                                                    cAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTAAAGGCAGGTAAGAAATGAg                                                                        >  7:162603/1‑149 (MQ=255)                                                                        gTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGa                                                                         >  5:185000/1‑144 (MQ=255)                                                                        gTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGa                                                                         <  6:185000/144‑1 (MQ=255)                                                                          cctcggcgccggggttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcagGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAAc                                                                                                   <  4:263192‑M1/42‑1 (MQ=255)                                                                          cctcggcgccggggttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcagGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAAc                                                                                                   >  3:263192‑M1/75‑116 (MQ=255)                                                                           aTCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATc                                                                 <  8:35660/149‑1 (MQ=255)                                                                            tcggcgccggggttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcagGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGAc                                                                                                       >  2:129831‑M1/73‑110 (MQ=255)                                                                            tcggcgccggggttttgctggaagacgttgatagcgctcatttcttacctgccttgaattcttgttcgtcagGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGAc                                                                                                       <  1:129831‑M1/38‑1 (MQ=255)                                                                             cGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCa                                                                <  2:198306/148‑1 (MQ=255)                                                                                ggCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAgc                                                                       >  3:128743/1‑138 (MQ=255)                                                                                ggCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAgc                                                                       <  4:128743/138‑1 (MQ=255)                                                                                           tgtCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCaa                                                  >  7:198288/1‑148 (MQ=255)                                                                                           tgtCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCaa                                                  >  8:157194/1‑148 (MQ=255)                                                                                               ttCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGTGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAAccc                                             >  4:127748/1‑149 (MQ=255)                                                                                               ttCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAAccc                                             >  5:3450/1‑149 (MQ=255)                                                                                                   gtgtTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGgc                                         >  5:142833/1‑149 (MQ=255)                                                                                                     gtTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGgcgc                                       >  8:35525/1‑149 (MQ=255)                                                                                                         ttcGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAg                                   >  6:127853/1‑149 (MQ=255)                                                                                                         ttcGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAg                                   >  5:141969/1‑149 (MQ=255)                                                                                                           cGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGa                                    <  6:60/146‑1 (MQ=255)                                                                                                           cGAGCCGAAGGGTGAGCGGCAGACCGGCTACGGCCCCGGCTGGCGGCGCAGCCTGATTGCCCGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAg                                   <  8:198288/147‑1 (MQ=255)                                                                                                              tacGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCa                               >  8:247632/3‑148 (MQ=255)                                                                                                                 gAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGc                           >  3:121082/1‑149 (MQ=255)                                                                                                                 gAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGc                           >  1:51948/1‑149 (MQ=255)                                                                                                                           cGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGc                                                                                      <  3:25950/80‑1 (MQ=255)                                                                                                                           cGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGc                                                                                      >  4:25950/1‑80 (MQ=255)                                                                                                                              cAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTg              >  4:248635/1‑149 (MQ=255)                                                                                                                               aGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGc             <  2:51948/149‑1 (MQ=255)                                                                                                                                 aaCGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTc                                                           <  8:156392/101‑1 (MQ=255)                                                                                                                                 aaCGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTc                                                           >  7:156392/1‑101 (MQ=255)                                                                                                                                    gTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCAt        >  5:292029/1‑149 (MQ=255)                                                                                                                                    gTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCAt        >  1:139963/1‑149 (MQ=255)                                                                                                                                           gCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGc                   <  6:298727/131‑1 (MQ=255)                                                                                                                                           gCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGc                   >  5:298727/1‑131 (MQ=255)                                                                                                                                            ccccGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCATGCCTAc  <  6:252510/147‑1 (MQ=255)                                                                                                                                            ccccGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCATGCCTAc  >  5:252510/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                           CCATGGGTGTGGTCAAAGGCGGCCTCAAGCGCATGGGCGAGCGTGTCTACTCGCCGCAGGCGGATGGCAGCGTGATCGAGGCGGAAATCGTGTCTTCGGTGTTCTTCGATCCGAAGGGTGAGCGGCAGAACGTCTAAGGCCCCGGATGGCGGCGCAGCCTGATTGCACGGCTGCGCTGCCCTGACGAACAAGAATTCAAGGCAGGTAAGAAATGAGCGCTATCAACGTCTTCCAGCAAAACCCCGGCGCCGAGGCCAAAGCCCAGTCGCCACTGCACCATGCCGAC  >  NC_002947/392605‑392890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.