New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	747103 =	53 (1.080)	3 (0.070)	3/246	NT	6.2%	intergenic (‑230/‑564)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	747144 =	41 (0.890)					intergenic (‑271/‑523)	PP_0638/PP_5448	transposase/hypothetical protein

CCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACC  >  NC_002947/746955‑747247                                                                                                                                                     |                                                                                                                                                  gtgcgagcaacgcccccgttgggtaatctcataactcggacaaaggtccctgagggattcgtaacgtttttctgggtatgactcagccccccccgaatccaaatgcgaggtgggctgctgattaccgaaggcgtgatgatggtgggtcg                                                                                                                                                   <  3:230205‑M1/1‑1 (MQ=255)      aCGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTg                                                                                                                                              >  8:225728/1‑149 (MQ=255)            aGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCaa                                                                                                                                          <  4:195259/147‑1 (MQ=255)              aaaaCCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     >  5:24619/1‑149 (MQ=255)              aaaaCCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     >  2:193491/1‑149 (MQ=255)                   cccAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCATCAGCTGCAGGGCAGCTCGTGATATAGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGAACCGAACGTTCTGGTGCTGTCAA‑TCACGTCAc                                                                                                                                >  6:89561/1‑149 (MQ=255)                            caTAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     >  4:232487/1‑135 (MQ=255)                            caTAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     <  3:232487/135‑1 (MQ=255)                            caTAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGt                                                                                                                         >  4:138648/1‑147 (MQ=255)                                 cTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCAc                                                                                                                  <  4:281421/149‑1 (MQ=255)                                  tCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACg                                                                                                                 >  2:295983/1‑149 (MQ=255)                                   cAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGc                                                                                                                >  1:169054/1‑149 (MQ=255)                                    aaTGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     <  4:114433/127‑1 (MQ=255)                                    aaTGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGAc                                                                                                                                     >  3:114433/1‑127 (MQ=255)                                     aTGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCa                                                                                                              <  3:727/149‑1 (MQ=255)                                        acaaaggtccctgagggattcgtaacgtttttctgggtatgactcagccccccccgaatccaaatgcgaggtgggctgctgattaccgaaggcgtgatgatggtgggtcGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCa                                                                                                           >  5:31099‑M1/110‑149 (MQ=255)                                             gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                      <  2:211280/149‑1 (MQ=255)                                             gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                      >  4:190897/1‑149 (MQ=255)                                                cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                        <  5:162646/144‑1 (MQ=255)                                                cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                        >  6:162646/1‑144 (MQ=255)                                                 cctgagggattcgtaacgtttttctgggtatgactcagccccccccgaatccaaatgcgaggtgggctgctgattaccgaaggcgtgatgatggtgggtcGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCAc                                                                                                          >  7:179381‑M1/101‑141 (MQ=255)                                                 cctgagggattcgtaacgtttttctgggtatgactcagccccccccgaatccaaatgcgaggtgggctgctgattaccgaaggcgtgatgatggtgggtcGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCAc                                                                                                          <  8:179381‑M1/41‑1 (MQ=255)                                                      ccAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACcatcat                                                                                             >  1:277635/1‑149 (MQ=255)                                                         aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                          <  2:56542/149‑1 (MQ=255)                                                         aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                          <  3:190897/149‑1 (MQ=255)                                                          cccTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACg                                                                                         >  7:221114/1‑149 (MQ=255)                                                                   gcagggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTa                                                                                <  7:225728/149‑1 (MQ=255)                                                                      gggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATc                                                                             <  8:221114/149‑1 (MQ=255)                                                                           gCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATcagcag                                                                        <  6:24619/149‑1 (MQ=255)                                                                               gTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGccc                                                                     <  2:169054/148‑1 (MQ=255)                                                                                           aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                          <  1:193491/147‑1 (MQ=255)                                                                                           aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                          <  1:280420/147‑1 (MQ=255)                                                                                           aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTg                                                         >  7:283700/1‑148 (MQ=255)                                                                                           aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTGCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                          <  4:169326/147‑1 (MQ=255)                                                                                             gATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGAt                                                      >  4:230205/1‑149 (MQ=255)                                                                                                 ggCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCg                                                   <  2:277635/148‑1 (MQ=255)                                                                                                  gCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggg                                                 >  4:271300/1‑149 (MQ=255)                                                                                                         ttCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCt                                          <  5:89561/149‑1 (MQ=255)                                                                                                          tCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGt                                                                                                                         <  5:3738/69‑1 (MQ=255)                                                                                                          tCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGt                                                                                                                         >  6:3738/1‑69 (MQ=255)                                                                                                            aTAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAg                                       >  8:214613/1‑149 (MQ=255)                                                                                                             tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                      <  8:283700/149‑1 (MQ=255)                                                                                                             tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGAGAGGCCCGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCCCCTCGCATTTGGATTCGGGGGGGGCTGAGt                                      >  1:74180/1‑149 (MQ=255)                                                                                                              aGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                      >  3:145524/1‑148 (MQ=255)                                                                                                                gAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCa                                    >  2:228376/1‑148 (MQ=255)                                                                                                                 aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAAGTGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                            >  1:222112/1‑140 (MQ=255)                                                                                                                 aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                            <  2:222112/139‑1 (MQ=255)                                                                                                                  aaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAc                                 <  1:295983/149‑1 (MQ=255)                                                                                                                      tCGGGTAAGAGGGGTGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAcc                                >  1:280063/1‑146 (MQ=255)                                                                                                                                 gggCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTAc                  >  5:234435/1‑149 (MQ=255)                                                                                                                                    cggcACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGaa               <  5:73732/149‑1 (MQ=255)                                                                                                                                         ccgaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                              >  8:37150/1‑97 (MQ=255)                                                                                                                                         ccgaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                              <  7:37150/97‑1 (MQ=255)                                                                                                                                           gaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCATCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa        <  7:186555/149‑1 (MQ=255)                                                                                                                                           gaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa        <  7:214613/149‑1 (MQ=255)                                                                                                                                            accgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAg       >  1:42124/1‑149 (MQ=255)                                                                                                                                             ccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg      <  3:271300/149‑1 (MQ=255)                                                                                                                                                ttCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAc   >  7:98907/1‑149 (MQ=255)                                                                                                                                                  cTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGGTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAcc  <  1:228376/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACC  >  NC_002947/746955‑747247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.