New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	747103 =	53 (1.080)	3 (0.070)	3/246	NT	6.2%	intergenic (‑230/‑564)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	747144 =	41 (0.890)					intergenic (‑271/‑523)	PP_0638/PP_5448	transposase/hypothetical protein

GTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCACC  >  NC_002947/746999‑747292                                                                                                                                                   |                                                                                                                                                     gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                                                                   >  4:190897/1‑149 (MQ=255) gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                                                                   <  2:211280/149‑1 (MQ=255)    cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                                                                     >  6:162646/1‑144 (MQ=255)    cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                                                                     <  5:162646/144‑1 (MQ=255)          ccAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACcatcat                                                                                                                                          >  1:277635/1‑149 (MQ=255)             aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                                                                       <  2:56542/149‑1 (MQ=255)             aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                                                                       <  3:190897/149‑1 (MQ=255)              cccTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACg                                                                                                                                      >  7:221114/1‑149 (MQ=255)                       gcagggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTa                                                                                                                             <  7:225728/149‑1 (MQ=255)                          gggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATc                                                                                                                          <  8:221114/149‑1 (MQ=255)                               gCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATcagcag                                                                                                                     <  6:24619/149‑1 (MQ=255)                                   gTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGccc                                                                                                                  <  2:169054/148‑1 (MQ=255)                                               aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  1:280420/147‑1 (MQ=255)                                               aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  1:193491/147‑1 (MQ=255)                                               aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTg                                                                                                      >  7:283700/1‑148 (MQ=255)                                               aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTGCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  4:169326/147‑1 (MQ=255)                                                 gATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGAt                                                                                                   >  4:230205/1‑149 (MQ=255)                                                     ggCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCg                                                                                                <  2:277635/148‑1 (MQ=255)                                                      gCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggg                                                                                              >  4:271300/1‑149 (MQ=255)                                                             ttCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCt                                                                                       <  5:89561/149‑1 (MQ=255)                                                                aTAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAg                                                                                    >  8:214613/1‑149 (MQ=255)                                                                 tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   <  8:283700/149‑1 (MQ=255)                                                                 tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGAGAGGCCCGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCCCCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   >  1:74180/1‑149 (MQ=255)                                                                  aGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   >  3:145524/1‑148 (MQ=255)                                                                    gAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCa                                                                                 >  2:228376/1‑148 (MQ=255)                                                                     aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAAGTGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                                                                         >  1:222112/1‑140 (MQ=255)                                                                     aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                                                                         <  2:222112/139‑1 (MQ=255)                                                                      aaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAc                                                                              <  1:295983/149‑1 (MQ=255)                                                                          tCGGGTAAGAGGGGTGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAcc                                                                             >  1:280063/1‑146 (MQ=255)                                                                                     gggCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTAc                                                               >  5:234435/1‑149 (MQ=255)                                                                                        cggcACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGaa                                                            <  5:73732/149‑1 (MQ=255)                                                                                             ccgaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                                                                           <  7:37150/97‑1 (MQ=255)                                                                                             ccgaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                                                                           >  8:37150/1‑97 (MQ=255)                                                                                               gaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCATCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa                                                     <  7:186555/149‑1 (MQ=255)                                                                                               gaccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa                                                     <  7:214613/149‑1 (MQ=255)                                                                                                accgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAg                                                    >  1:42124/1‑149 (MQ=255)                                                                                                 ccgTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   <  3:271300/149‑1 (MQ=255)                                                                                                    ttCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAc                                                >  7:98907/1‑149 (MQ=255)                                                                                                      cTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGGTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAcc                                               <  1:228376/148‑1 (MQ=255)                                                                                                          gtgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   <  8:179381‑M2/100‑1 (MQ=255)                                                                                                          gtgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   >  7:179381‑M2/42‑141 (MQ=255)                                                                                                           tgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGt                                          >  5:31099‑M2/41‑149 (MQ=255)                                                                                                                      aCGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATga                               <  8:98907/149‑1 (MQ=255)                                                                                                                      aCGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATga                               <  3:138648/149‑1 (MQ=255)                                                                                                                        gTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTAt                                 <  3:107194/145‑1 (MQ=255)                                                                                                                        gTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTAt                                 >  4:107194/1‑145 (MQ=255)                                                                                                                            ccAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTAc                         <  6:234435/149‑1 (MQ=255)                                                                                                                             cAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGCGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTAcc                        >  2:184561/1‑149 (MQ=255)                                                                                                                                         aCGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCACTCAGGGACCTTTGTCCAAGTTATGAGATTACCCACCGGGGGCGt            >  8:236284/1‑149 (MQ=255)                                                                                                                                                  cGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCAc   <  3:230205‑M2/148‑1 (MQ=255)                                                                                                                                                   gACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCAcc  >  4:97385/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAA‑TGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCACC  >  NC_002947/746999‑747292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.