New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 747103 =53 (1.080)3 (0.070) 3/246 NT 6.2% intergenic (‑230/‑564) PP_0638/PP_5448 transposase/hypothetical protein
?NC_002947 747144 = 41 (0.890)intergenic (‑271/‑523) PP_0638/PP_5448 transposase/hypothetical protein

GTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCACC  >  NC_002947/746999‑747292
                                                                                                                                                  |                                                                                                                                                    
gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                                                                   >  4:190897/1‑149 (MQ=255)
gTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGAcc                                                                                                                                                   <  2:211280/149‑1 (MQ=255)
   cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                                                                     >  6:162646/1‑144 (MQ=255)
   cAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGa                                                                                                                                                     <  5:162646/144‑1 (MQ=255)
         ccAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACcatcat                                                                                                                                          >  1:277635/1‑149 (MQ=255)
            aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                                                                       <  2:56542/149‑1 (MQ=255)
            aCCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCAc                                                                                                                                       <  3:190897/149‑1 (MQ=255)
             cccTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACg                                                                                                                                      >  7:221114/1‑149 (MQ=255)
                      gcagggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTa                                                                                                                             <  7:225728/149‑1 (MQ=255)
                         gggcagCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATc                                                                                                                          <  8:221114/149‑1 (MQ=255)
                              gCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATcagcag                                                                                                                     <  6:24619/149‑1 (MQ=255)
                                  gTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGccc                                                                                                                  <  2:169054/148‑1 (MQ=255)
                                              aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  1:280420/147‑1 (MQ=255)
                                              aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  1:193491/147‑1 (MQ=255)
                                              aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTg                                                                                                      >  7:283700/1‑148 (MQ=255)
                                              aCGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTGCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt                                                                                                       <  4:169326/147‑1 (MQ=255)
                                                gATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGAt                                                                                                   >  4:230205/1‑149 (MQ=255)
                                                    ggCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCg                                                                                                <  2:277635/148‑1 (MQ=255)
                                                     gCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggg                                                                                              >  4:271300/1‑149 (MQ=255)
                                                            ttCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCt                                                                                       <  5:89561/149‑1 (MQ=255)
                                                               aTAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAg                                                                                    >  8:214613/1‑149 (MQ=255)
                                                                tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   <  8:283700/149‑1 (MQ=255)
                                                                tAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGAGAGGCCCGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCCCCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   >  1:74180/1‑149 (MQ=255)
                                                                 aGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGt                                                                                   >  3:145524/1‑148 (MQ=255)
                                                                   gAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCa                                                                                 >  2:228376/1‑148 (MQ=255)
                                                                    aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAAGTGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                                                                         >  1:222112/1‑140 (MQ=255)
                                                                    aaaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgggggggg                                                                                         <  2:222112/139‑1 (MQ=255)
                                                                     aaTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAc                                                                              <  1:295983/149‑1 (MQ=255)
                                                                         tCGGGTAAGAGGGGTGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAcc                                                                             >  1:280063/1‑146 (MQ=255)
                                                                                    gggCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTAc                                                               >  5:234435/1‑149 (MQ=255)
                                                                                       cggcACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGaa                                                            <  5:73732/149‑1 (MQ=255)
                                                                                            ccgaccgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                                                                           <  7:37150/97‑1 (MQ=255)
                                                                                            ccgaccgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc                                                                                                           >  8:37150/1‑97 (MQ=255)
                                                                                              gaccgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCATCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa                                                     <  7:186555/149‑1 (MQ=255)
                                                                                              gaccgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCa                                                     <  7:214613/149‑1 (MQ=255)
                                                                                               accgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAg                                                    >  1:42124/1‑149 (MQ=255)
                                                                                                ccgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   <  3:271300/149‑1 (MQ=255)
                                                                                                   ttCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAc                                                >  7:98907/1‑149 (MQ=255)
                                                                                                     cTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGGTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGAcc                                               <  1:228376/148‑1 (MQ=255)
                                                                                                         gtgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   <  8:179381‑M2/100‑1 (MQ=255)
                                                                                                         gtgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAgg                                                   >  7:179381‑M2/42‑141 (MQ=255)
                                                                                                          tgctggcgtgcctcaccgttggtgacgtcattgccagcacGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGt                                          >  5:31099‑M2/41‑149 (MQ=255)
                                                                                                                     aCGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATga                               <  8:98907/149‑1 (MQ=255)
                                                                                                                     aCGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATga                               <  3:138648/149‑1 (MQ=255)
                                                                                                                       gTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTAt                                 <  3:107194/145‑1 (MQ=255)
                                                                                                                       gTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTAt                                 >  4:107194/1‑145 (MQ=255)
                                                                                                                           ccAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTAc                         <  6:234435/149‑1 (MQ=255)
                                                                                                                            cAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGCGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTAcc                        >  2:184561/1‑149 (MQ=255)
                                                                                                                                        aCGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCACTCAGGGACCTTTGTCCAAGTTATGAGATTACCCACCGGGGGCGt            >  8:236284/1‑149 (MQ=255)
                                                                                                                                                 cGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCAc   <  3:230205‑M2/148‑1 (MQ=255)
                                                                                                                                                  gACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCAcc  >  4:97385/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
GTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCGTTGCTCGCACC  >  NC_002947/746999‑747292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.