New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 939586	43 (0.880)	3 (0.060)	3/248	NT	6.5%	coding (6036/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 939632	45 (0.970)					coding (5990/18933 nt)	PP_0806	surface adhesion protein

GATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTG  >  NC_002947/939442‑939733                                                                                                                                                 |                                                                                                                                                    gATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAgg                                                                                                                                                 >  1:62093/1‑149 (MQ=255)              tCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGaa                                                                                                                                                   <  1:180391/134‑1 (MQ=255)              tCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGaa                                                                                                                                                   >  2:180391/1‑134 (MQ=255)                 gTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTg                                                                                                                                               >  2:3458/1‑135 (MQ=255)                 gTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTg                                                                                                                                               <  1:3458/135‑1 (MQ=255)                     gCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTg                                                                                                                             <  8:148762/149‑1 (MQ=255)                            gggggCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCtgtg                                                                                                                       <  5:199814/148‑1 (MQ=255)                             ggggCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCtgtt                                                                                                                       >  6:199814/1‑146 (MQ=255)                                       ggTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTg                                                                                                           >  6:137615/1‑149 (MQ=255)                                        gTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGc                                                                                                          >  5:91723/1‑149 (MQ=255)                                          cTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCt                                                                                                        >  3:77361/1‑149 (MQ=255)                                             gcgtggcgACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGt                                                                                                                              >  2:219556/1‑124 (MQ=255)                                             gcgtggcgACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGt                                                                                                                              <  1:219556/124‑1 (MQ=255)                                             gcgtggcgACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGc                                                                                                      >  2:62093‑M2/1‑147 (MQ=255)                                                  gcgACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGcaggcaccgtagttgccacaggcacggtcaacccggatggcaccttcgccatc                                                                                                <  5:207067‑M1/149‑54 (MQ=255)                                                    gACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATcgc                                                                                              <  5:309038/149‑1 (MQ=255)                                                     aCCGAGCCGGGTTGCCAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATcgcg                                                                                             <  1:118856/149‑1 (MQ=255)                                                             gggTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGaa                                                                                     >  6:141861/1‑149 (MQ=255)                                                                  gCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                 <  5:141861/148‑1 (MQ=255)                                                                    gagaCATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGcaggcaccgtagttgccacaggcacggtcaacccggatggcaccttcgcc                                                                                                   >  6:173419‑M1/1‑78 (MQ=255)                                                                    gagaCATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGcaggcaccgtagttgccacaggcacggtcaacccggatggcaccttcgcc                                                                                                   <  5:173419‑M1/128‑51 (MQ=255)                                                                    gagaCATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTgg                                                                               >  7:53340/1‑148 (MQ=255)                                                                         aTTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGCGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCtgt                                                                                                                        <  4:91463/102‑1 (MQ=255)                                                                         aTTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGAGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCtgt                                                                                                                        >  3:91463/1‑102 (MQ=255)                                                                             ccGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGCGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCtt                                                                      >  5:157666/1‑148 (MQ=255)                                                                             ccGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGCGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTc                                                                     <  6:157666/149‑1 (MQ=255)                                                                                gtaGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                 >  4:201755/3‑134 (MQ=255)                                                                                gtaGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                 <  3:201755/132‑1 (MQ=255)                                                                                              ggTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTg                                                                                >  2:50772/1‑121 (MQ=255)                                                                                                tCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTc                                                        <  5:11552/143‑1 (MQ=255)                                                                                                tCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTc                                                        >  6:11552/1‑143 (MQ=255)                                                                                                 cACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAgctggc                                                 >  1:43748/1‑149 (MQ=255)                                                                                                          ggTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCcggcgg                                        <  6:91723/149‑1 (MQ=255)                                                                                                          ggTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGGGCCTGCGCCAGCGCCCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCcggcgg                                        >  1:254043/1‑149 (MQ=255)                                                                                                               tGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                    >  7:273119/1‑148 (MQ=255)                                                                                                                 ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                    <  6:309772/146‑1 (MQ=255)                                                                                                                 ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                    >  5:309772/1‑146 (MQ=255)                                                                                                                 ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGa                                  >  6:54711/1‑148 (MQ=255)                                                                                                                                gggTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCgg                  <  2:43748/149‑1 (MQ=255)                                                                                                                                 ggTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                 <  8:53340/149‑1 (MQ=255)                                                                                                                                  gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGt                         >  7:40333/1‑140 (MQ=255)                                                                                                                                  gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGt                         <  8:40333/140‑1 (MQ=255)                                                                                                                                  gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCgggg                >  1:57380/1‑149 (MQ=255)                                                                                                                                   ttCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGc               >  6:258901/1‑149 (MQ=255)                                                                                                                                   ttCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGc               <  5:18935/149‑1 (MQ=255)                                                                                                                                     cAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCtt             >  2:66030/1‑149 (MQ=255)                                                                                                                                        ggTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                 >  7:189984/1‑142 (MQ=255)                                                                                                                                        ggTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                 <  8:189984/142‑1 (MQ=255)                                                                                                                                          tGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCAGCAGGTTGGTCGGGGCTTCCGGt        >  5:300722/1‑149 (MQ=255)                                                                                                                                           gATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctcgcaacccggctcggtcgc       <  5:207067‑M2/149‑97 (MQ=255)                                                                                                                                            aTGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGTCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTgg      >  6:258706/1‑149 (MQ=255)                                                                                                                                              ggCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctc                         >  6:173419‑M2/1‑50 (MQ=255)                                                                                                                                              ggCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctc                         <  5:173419‑M2/128‑79 (MQ=255)                                                                                                                                                 gcaggcaccgtagttgccacaggcacggtcaacccggatggcaccttcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctcgcaacccggctcggtcgccacgc  >  2:62093‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GATCAAGGCCAGCTCGGTTGGCTGCGTGGGGGCCAGCAGGTCTGGCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTG  >  NC_002947/939442‑939733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.