New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 939586	43 (0.880)	3 (0.060)	3/248	NT	6.5%	coding (6036/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 939632	45 (0.970)					coding (5990/18933 nt)	PP_0806	surface adhesion protein

GCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTGGCGGT  >  NC_002947/939486‑939777                                                                                                                                                   |                                                                                                                                                  gcgtggcgACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGc                                                                                                                                                  >  2:62093‑M2/1‑147 (MQ=255)        gACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATcgc                                                                                                                                          <  5:309038/149‑1 (MQ=255)         aCCGAGCCGGGTTGCCAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATcgcg                                                                                                                                         <  1:118856/149‑1 (MQ=255)                 gggTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGaa                                                                                                                                 >  6:141861/1‑149 (MQ=255)                      gCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                                                             <  5:141861/148‑1 (MQ=255)                        gagaCATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTgg                                                                                                                           >  7:53340/1‑148 (MQ=255)                                 ccGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGCGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCtt                                                                                                                  >  5:157666/1‑148 (MQ=255)                                 ccGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGCGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTc                                                                                                                 <  6:157666/149‑1 (MQ=255)                                    gtaGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                                                             <  3:201755/132‑1 (MQ=255)                                    gtaGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCt                                                                                                                             >  4:201755/3‑134 (MQ=255)                                                  ggTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTg                                                                                                                            >  2:50772/1‑121 (MQ=255)                                                    tCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTc                                                                                                    <  5:11552/143‑1 (MQ=255)                                                    tCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTc                                                                                                    >  6:11552/1‑143 (MQ=255)                                                     cACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAgctggc                                                                                             >  1:43748/1‑149 (MQ=255)                                                              ggTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCcggcgg                                                                                    <  6:91723/149‑1 (MQ=255)                                                              ggTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGGGCCTGCGCCAGCGCCCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCcggcgg                                                                                    >  1:254043/1‑149 (MQ=255)                                                                   tGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                                                                >  7:273119/1‑148 (MQ=255)                                                                     ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                                                                <  6:309772/146‑1 (MQ=255)                                                                     ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGtt                                                                                >  5:309772/1‑146 (MQ=255)                                                                     ccATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGa                                                                              >  6:54711/1‑148 (MQ=255)                                                                                    gggTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCgg                                                              <  2:43748/149‑1 (MQ=255)                                                                                     ggTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                                                             <  8:53340/149‑1 (MQ=255)                                                                                      gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGt                                                                     <  8:40333/140‑1 (MQ=255)                                                                                      gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGt                                                                     >  7:40333/1‑140 (MQ=255)                                                                                      gTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCgggg                                                            >  1:57380/1‑149 (MQ=255)                                                                                       ttCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGc                                                           >  6:258901/1‑149 (MQ=255)                                                                                       ttCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGc                                                           <  5:18935/149‑1 (MQ=255)                                                                                         cAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCtt                                                         >  2:66030/1‑149 (MQ=255)                                                                                            ggTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                                                             >  7:189984/1‑142 (MQ=255)                                                                                            ggTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCggg                                                             <  8:189984/142‑1 (MQ=255)                                                                                              tGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCAGCAGGTTGGTCGGGGCTTCCGGt                                                    >  5:300722/1‑149 (MQ=255)                                                                                               gATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctcgcaacccggctcggtcgc                                                   <  5:207067‑M2/149‑97 (MQ=255)                                                                                                aTGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGTCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTgg                                                  >  6:258706/1‑149 (MQ=255)                                                                                                  ggCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctc                                                                     >  6:173419‑M2/1‑50 (MQ=255)                                                                                                  ggCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGcgccatcaccttgaacccggccatcaccgatggcagtaccctgcaagtgaccctgaccgacgctgccggcaatgtctc                                                                     <  5:173419‑M2/128‑79 (MQ=255)                                                                                                    caccttcgCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCgtg                                              <  8:23853/142‑1 (MQ=255)                                                                                                      aaGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCgtggt                                            <  5:54711/149‑1 (MQ=255)                                                                                                             cATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTcgccg                                     >  4:177012/1‑149 (MQ=255)                                                                                                             cATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTcgccg                                     >  3:225200/1‑149 (MQ=255)                                                                                                              aTCCGGGTTGACCGAGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTcgccgc                                    >  7:123263/1‑149 (MQ=255)                                                                                                                   ggTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCg                               <  1:66030/149‑1 (MQ=255)                                                                                                                   ggTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCg                               <  4:77361/149‑1 (MQ=255)                                                                                                                       gACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGt                           >  4:281851/1‑149 (MQ=255)                                                                                                                         ccGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGTCTTCACCGCGACCGGTCAGCTGGCTTCCGTCGGGGTTGATCACCAGGTTGTTCGGGGCTTCCGGTGGCTTGGTGTCGCCGCCGTCGATTTcc                         <  2:254043/149‑1 (MQ=255)                                                                                                                                 gtgGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACAGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCgg                  >  5:160676/1‑148 (MQ=255)                                                                                                                                  tgGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCgg                  <  3:177012/147‑1 (MQ=255)                                                                                                                                    gCAACTACGGTGCCTGTGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAg              >  3:95641/1‑149 (MQ=255)                                                                                                                                    gCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTaa               <  5:258901/148‑1 (MQ=255)                                                                                                                                     cAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAgg             <  6:51403/149‑1 (MQ=255)                                                                                                                                            ggTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGAGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTgg      >  1:181800/1‑149 (MQ=255)                                                                                                                                             gTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTGGc     >  2:70953/1‑149 (MQ=255)                                                                                                                                               aagtGCGCGATGGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGGTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTGGCgg   >  5:67421/4‑149 (MQ=255)                                                                                                                                                ccTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTGGCGGt  >  3:208632/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GCGTGGCGACCGAGCCGGGTTGCGAGACATTGCCGGCAGCGTCGGTCAGGGTCACTTGCAGGGTACTGCCATCGGTGATGGCCGGGTTCAAGGTGATGGCGAAGGTGCCATCCGGGTTGACCGTGCCTGTGGCAACTACGGTGCCTGCGCCATCGCGCACTTGAACGCTGGTACCGGCTTCACCGCGACCGGTCAGCTGGCTGCCGGCGGGGTTGATCACCAGGTTGGTCGGGGCTTCCGGTGGCGTGGTGTCGCCGCCGTCGATGTCCGGCGCGGTAAGGTTGCTGGCGGT  >  NC_002947/939486‑939777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.