New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1011458	43 (0.880)	5 (0.110)	4/250	NT	9.7%	intergenic (‑396/‑131)	PP_0871/prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
	?	NC_002947	= 1011497	52 (1.110)					intergenic (‑435/‑92)	PP_0871/prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3

CGACTTGATGTGCTGCAGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGC  >  NC_002947/1011311‑1011605                                                                                                                                                    |                                                                                                                                                    cGACTTGATGTGCTGCAGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTgtgt                                                                                                                                                    >  4:137299/1‑149 (MQ=255)       gATGTACTGCAGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTAcc                                                                                                                                              >  7:92588/1‑149 (MQ=255)             ctgcAGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAg                                                                                                                                         <  2:75664/148‑1 (MQ=255)                cAGTCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGgcgc                                                                                                                                     <  2:253931/149‑1 (MQ=255)                 aGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGcgcg                                                                                                                                    >  4:216594/1‑149 (MQ=255)                  ggCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCgg                                                                                                                                   <  4:219864/149‑1 (MQ=255)                       tGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGccggccccttagcgggttttccc                                                                                                                              >  4:144034‑M1/1‑126 (MQ=255)                                  cGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGGGCGGGTTTACCCGCGAAggg                                                                                                                   <  8:92588/149‑1 (MQ=255)                                     tttGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAAACCTGTGTCGTACCTGTAGGCGCGGGTTTACCAGCGAAgggg                                                                                                                  >  1:53716/1‑147 (MQ=255)                                         gTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGACGGACTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCAGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGc                                                                                                             <  8:99349‑M2/148‑2 (MQ=255)                                              ttGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGccggccccttcgcgggtaaacccgcgcctacaggtacgacacagg                                                                                                        <  4:8513‑M1/148‑46 (MQ=255)                                              ttGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGccggccccttcgcgggtaaacccgcgcctacaggtacgacacagg                                                                                                        >  3:8513‑M1/1‑103 (MQ=255)                                              ttGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGccggccccttcgcgggtaaacccgcgcctacaggtacgacacagg                                                                                                        <  8:169491‑M1/148‑46 (MQ=255)                                                 tCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGccggccccttcgcgggtaaacccgcgcctacaggtacgacacagggttc                                                                                                    <  6:150496‑M1/149‑50 (MQ=255)                                                   gTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCggg                                                                                                                                  >  3:176690/1‑117 (MQ=255)                                                   gTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCggg                                                                                                                                  <  4:176690/117‑1 (MQ=255)                                                    tGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACCGGCGCcatt                                                                                                 >  8:135939/1‑149 (MQ=255)                                                        aaaGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCcattcatt                                                                                             >  3:85339/1‑149 (MQ=255)                                                                      ttGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTgg                                                                                <  3:137299/148‑1 (MQ=255)                                                                      ttGGGTTTGTTTTGTTTGTGCCGGACTCTTCGCGGTTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTg                                                                                 <  7:99349/147‑1 (MQ=255)                                                                        gggTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTc                                                                              <  3:194917/148‑1 (MQ=255)                                                                          gtttgtttTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAg                                                                           >  8:165399/1‑149 (MQ=255)                                                                                   gtttgtGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACAGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACtt                                                                  >  1:75722/1‑149 (MQ=255)                                                                                      tgtgCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCa                                                                <  4:85339/148‑1 (MQ=255)                                                                                              ccTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGACCCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTc                                                                              >  5:38213/1‑126 (MQ=255)                                                                                              ccTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTc                                                                              <  6:38213/126‑1 (MQ=255)                                                                                              ccTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATa                                                       <  3:216594/149‑1 (MQ=255)                                                                                                  ttCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGc                                                   >  5:38357/1‑149 (MQ=255)                                                                                                     gcgGGAAAACTCGCTCCTACCAACACTGCACCGCATCCGAACCCTGGGCCGGCCCCTT‑‑‑CGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCtt                                              <  3:144034/148‑1 (MQ=37)                                                                                                       gggTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTAt                                                           <  7:252389/136‑1 (MQ=255)                                                                                                       gggTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTAt                                                           >  8:252389/1‑136 (MQ=255)                                                                                                       gggTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCtt                                              >  5:26408/1‑149 (MQ=255)                                                                                                         gTAAACTCGCACCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTc                                            <  2:256209/149‑1 (MQ=255)                                                                                                                 gCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATcc                                      <  6:38357/147‑1 (MQ=255)                                                                                                                   tCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATcccc                                    >  1:266323/1‑147 (MQ=255)                                                                                                                        cGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAg                             >  2:175495/1‑149 (MQ=255)                                                                                                                         gAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGt                                >  1:263096/1‑145 (MQ=255)                                                                                                                         gAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAgg                            <  2:266323/149‑1 (MQ=255)                                                                                                                           aGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCg                          <  2:75722/149‑1 (MQ=255)                                                                                                                               tGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATccccc                                   <  4:227255/136‑1 (MQ=255)                                                                                                                               tGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATccccc                                   >  3:227255/1‑136 (MQ=255)                                                                                                                                  aCCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTccc                   <  7:165399/149‑1 (MQ=255)                                                                                                                                      cATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGa               <  1:175495/149‑1 (MQ=255)                                                                                                                                         ccGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAg                                                               <  1:126736/98‑1 (MQ=255)                                                                                                                                         ccGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAg                                                               >  2:126736/1‑98 (MQ=255)                                                                                                                                          cGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATcc                                      <  7:46037/122‑1 (MQ=255)                                                                                                                                          cGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGAGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATcc                                      >  8:46037/1‑122 (MQ=255)                                                                                                                                           ggaCCCTGTGGCGTACCTGTCGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATcccc                                    <  2:282296/121‑1 (MQ=255)                                                                                                                                           gAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGcacagggttcggatgcggtgcagtcttcgtaggagcgagtttacccgcgaagaggccggcacaaacaaaacaaacccaacaggcaatcgctttatcacga          <  6:150496‑M2/149‑101 (MQ=255)                                                                                                                                             aCCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGaccaacca        <  6:26408/149‑1 (MQ=255)                                                                                                                                              cccTGTGTCGTACCTTTCGGCGCGGGTTTACCCGCGAAGGGGCCGGCACATGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAg       <  7:135939/149‑1 (MQ=255)                                                                                                                                               ccTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGcacagggttcggatgcggtgcagtcttcgtaggagcgagtttacccgcgaagaggccggcacaaacaaaacaaacccaacaggcaatcgctttatcacgacaa       <  4:8513‑M2/148‑104 (MQ=255)                                                                                                                                               ccTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGcacagggttcggatgcggtgcagtcttcgtaggagcgagtttacccgcgaagaggccggcacaaacaaaacaaacccaacaggcaatcgctttatcacgacaa       <  8:169491‑M2/148‑104 (MQ=255)                                                                                                                                               ccTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGcacagggttcggatgcggtgcagtcttcgtaggagcgagtttacccgcgaagaggccggcacaaacaaaacaaacccaacaggcaatcgctttatcacgacaa       >  3:8513‑M2/1‑45 (MQ=255)                                                                                                                                                 tgtgTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGgcc    >  7:50418/1‑149 (MQ=255)                                                                                                                                                 tgtgTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGgcc    >  3:184660/1‑149 (MQ=255)                                                                                                                                                    gccggccccttcgcgggtaaacccgcgcctacaggtacgacacagggttctgatgcggtgcagtcttcgtaggagcgagtttacccgcgaagagtccgtcacaaacaaaacaaacccaacaggcaatcgctttatcacgacaaataac  <  8:99349‑M1/148‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGACTTGATGTGCTGCAGGCGTTGAAATAACTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGC  >  NC_002947/1011311‑1011605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.