New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1380487 =	33 (0.670)	9 (0.200)	7/238	NT	26.5%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380526 =	20 (0.450)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met

AACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTC  >  NC_002947/1380340‑1380628                                                                                                                                                    |                                                                                                                                                gaaaaatcaaagcctagcgcttgacatacaaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagaa                                                                                                                                                <  3:224188‑M1/2‑1 (MQ=255)       tcaaagcctagcgcttgacatacaaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAAcc                                                                                                                                          <  4:254352‑M1/8‑1 (MQ=255)       tcaaagcctagcgcttgacatacaaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggatcccgcaaccatgttcgtaagAACAAAcc                                                                                                                                          <  7:209480‑M1/8‑1 (MQ=255)          aagcctagcgcttgacatacaaaccacagactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCcg                                                                                                                                       <  1:172873‑M1/11‑1 (MQ=255)          aaTGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCcg                                                                                                                                       >  7:8092/1‑149 (MQ=255)              ttACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCgct                                                                                                                                   >  8:245688/1‑149 (MQ=255)                  tCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCACGCGCTGCtt                                                                                                                               >  5:79468/1‑149 (MQ=255)                    cGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCtt                                                                                                                               <  6:276727/147‑1 (MQ=255)                       ccTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTaca                                                                                                                          <  5:275587/149‑1 (MQ=255)                        cTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGAGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTaca                                                                                                                          >  5:142104/1‑148 (MQ=255)                         tCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAAc                                                                                                                                           <  2:304553/130‑1 (MQ=255)                         tCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAAc                                                                                                                                           >  1:304553/1‑130 (MQ=255)                           aGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAg                                                                                                                       <  2:207328/148‑1 (MQ=255)                           aGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGATGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAAAAAACCCCGCGCTGCTTTTACACAg‑g                                                                                                                     >  5:247580/1‑149 (MQ=255)                              aaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCgg                                                                                                                  <  3:287602‑M1/31‑1 (MQ=255)                                 ccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGt                                                                                                               >  3:254352‑M1/116‑149 (MQ=255)                                  cacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGtt                                                                                                              >  2:246258‑M1/115‑149 (MQ=255)                                  cacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGtt                                                                                                              >  1:169541‑M1/115‑149 (MQ=255)                                    cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTg                                                                                                            <  3:222040/149‑1 (MQ=255)                                          cTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                      >  7:251374/1‑149 (MQ=255)                                          cTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                      <  8:8092/149‑1 (MQ=255)                                           tagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                      >  4:287602‑M1/106‑148 (MQ=255)                                             gaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGtt                                                                                                              >  1:56150‑M1/104‑138 (MQ=255)                                             gaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGtt                                                                                                              <  2:56150‑M1/35‑1 (MQ=255)                                              gCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGaa                                                                                                  >  3:151584/1‑149 (MQ=255)                                                       aaGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGc                                                                                         <  6:142104/149‑1 (MQ=255)                                                                   ccTGGGCACGACATCTCACCCCGGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAtt                                                                             <  6:214842/149‑1 (MQ=255)                                                                    cTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAttt                                                                            <  2:198749/149‑1 (MQ=255)                                                                    cTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAtt                                                                             <  7:245688/148‑1 (MQ=255)                                                                     tgtgCACGACATCTGAAGCCTGCTGGTTGGCATGATGGTAGTGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGATGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGTTTg                                                                                          <  8:247032/131‑1 (MQ=255)                                                                              cATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGtt                                                                                                          <  5:20454/109‑1 (MQ=255)                                                                              cATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGtt                                                                                                          >  6:20454/1‑109 (MQ=255)                                                                                tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                        >  1:224124/1‑141 (MQ=255)                                                                                tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                        <  2:224124/141‑1 (MQ=255)                                                                                tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGAcc                                                               >  5:41603/1‑149 (MQ=255)                                                                                          gCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTg                                                                                          >  2:54302/1‑113 (MQ=255)                                                                                          gCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTg                                                                                          <  1:54302/113‑1 (MQ=255)                                                                                                                   ttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGC‑CTGTGTAAAAGCAGCGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgct                            <  3:95511‑M1/116‑1 (MQ=255)                                                                                                                    tCGATGCGACGAAAGGCAGGGAGGTAAAAACCAACAAACCCCCCGCTGCCTTTACACAG‑GCGGGGTTTGTTCTGACGAATATTGTTGCGGGAGCCGGATTTGAACCTGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgct                            <  1:57942/149‑1 (MQ=25)                                                                                                                             cgaAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgcg                  <  4:151584/149‑1 (MQ=255)                                                                                                                                cccgcaaccatattcgtcagAACAAACCCCGC‑CTGTGTAAAAGCAGCGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCa               >  4:95511‑M1/21‑149 (MQ=255)                                                                                                                                  gTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGAGCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGt             >  2:172873/1‑149 (MQ=255)                                                                                                                                     aGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTggg          <  8:251374/149‑1 (MQ=255)                                                                                                                                       ggAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc        <  6:41603/149‑1 (MQ=255)                                                                                                                                        gAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCg       <  5:188731/149‑1 (MQ=255)                                                                                                                                             ataAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAACATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCACGACGCGCTACAAGGCTGCTCCATCCCGCCTCAGTGGGGCGGATTc  >  8:209480/1‑149 (MQ=21)                                                                                                                                                    |                                                                                                                                                AACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTC  >  NC_002947/1380340‑1380628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.