New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1380487 =	33 (0.670)	9 (0.200)	7/238	NT	26.5%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380526 =	20 (0.450)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met

CTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTC  >  NC_002947/1380381‑1380672                                                                                                                                                   |                                                                                                                                                    cTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                                                                  <  8:8092/149‑1 (MQ=255) cTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                                                                  >  7:251374/1‑149 (MQ=255)  tagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGa                                                                                                                                                  >  4:287602‑M1/106‑148 (MQ=255)     gCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGaa                                                                                                                                              >  3:151584/1‑149 (MQ=255)              aaGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGc                                                                                                                                     <  6:142104/149‑1 (MQ=255)                  tgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagaacaaaccccgcgctgcttttacacaggcggggtttgttCTGACGAATATGGTTGCggg                                                                                                                                  >  4:95511‑M2/130‑149 (MQ=255)                          ccTGGGCACGACATCTCACCCCGGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAtt                                                                                                                         <  6:214842/149‑1 (MQ=255)                           cTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAttt                                                                                                                        <  2:198749/149‑1 (MQ=255)                           cTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAtt                                                                                                                         <  7:245688/148‑1 (MQ=255)                            tgtgCACGACATCTGAAGCCTGCTGGTTGGCATGATGGTAGTGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGATGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGTTTg                                                                                                                                      <  8:247032/131‑1 (MQ=255)                               agcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagaacaaaccccgcgctgcttttacacaggcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGaa                                                                                                                     <  3:95511‑M2/33‑1 (MQ=255)                                       tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                                                                    >  1:224124/1‑141 (MQ=255)                                       tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                                                                    <  2:224124/141‑1 (MQ=255)                                       tctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGAcc                                                                                                           >  5:41603/1‑149 (MQ=255)                                                 gCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTg                                                                                                                                      >  2:54302/1‑113 (MQ=255)                                                 gCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTg                                                                                                                                      <  1:54302/113‑1 (MQ=255)                                                                          ttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGC‑CTGTGTAAAAGCAGCGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgct                                                                        <  3:95511‑M1/116‑1 (MQ=255)                                                                           tCGATGCGACGAAAGGCAGGGAGGTAAAAACCAACAAACCCCCCGCTGCCTTTACACAG‑GCGGGGTTTGTTCTGACGAATATTGTTGCGGGAGCCGGATTTGAACCTGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgct                                                                        <  1:57942/149‑1 (MQ=25)                                                                                    cgaAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCcgcg                                                              <  4:151584/149‑1 (MQ=255)                                                                                       cccgcaaccatattcgtcagAACAAACCCCGC‑CTGTGTAAAAGCAGCGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCa                                                           >  4:95511‑M1/21‑149 (MQ=255)                                                                                         gTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGAGCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGt                                                         >  2:172873/1‑149 (MQ=255)                                                                                            aGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTggg                                                      <  8:251374/149‑1 (MQ=255)                                                                                              ggAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                                                    <  6:41603/149‑1 (MQ=255)                                                                                               gAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCg                                                   <  5:188731/149‑1 (MQ=255)                                                                                                    ataAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAACATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCACGACGCGCTACAAGGCTGCTCCATCCCGCCTCAGTGGGGCGGATTc                                              >  8:209480/1‑149 (MQ=21)                                                                                                        tcagaacaaaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTa                                            >  4:287602‑M2/44‑148 (MQ=255)                                                                                                            actaaCCCCGCGGGGCTTTTCCACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTAGCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCt                                             <  6:285943/139‑1 (MQ=18)                                                                                                            ACAAACCCCGCGCTGCTTTAACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGCCTGCTCCATCCCGCGTCAGTGGGGCGGATTCt                                             <  5:285943‑M1/142‑1 (MQ=255)                                                                                                             CAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTc                                                                       <  5:98857‑M1/115‑1 (MQ=255)                                                                                                             CAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTc                                                                       >  6:98857‑M1/1‑115 (MQ=255)                                                                                                              AAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgtgt                                    <  2:192486‑M1/149‑1 (MQ=255)                                                                                                                aaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTc                                              >  1:56150‑M2/36‑138 (MQ=255)                                                                                                                aaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTc                                              <  2:56150‑M2/103‑1 (MQ=255)                                                                                                                aaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGtgtgtg                                   >  2:246258‑M2/36‑149 (MQ=255)                                                                                                                aaccccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGtgtgtg                                   >  1:169541‑M2/36‑149 (MQ=255)                                                                                                                ACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTgg                                  <  4:301890‑M1/149‑1 (MQ=255)                                                                                                                 accccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTgg                                  >  3:254352‑M2/35‑149 (MQ=255)                                                                                                                  CCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgtgt                                    <  2:224682‑M1/145‑1 (MQ=255)                                                                                                                  CCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgtgt                                    >  1:224682‑M1/1‑145 (MQ=255)                                                                                                                  CCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgtg                                     <  4:157263‑M1/144‑1 (MQ=255)                                                                                                                  CCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAgtgtg                                     >  3:157263‑M1/1‑144 (MQ=255)                                                                                                                  CCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGtt                                <  7:267658‑M1/149‑1 (MQ=255)                                                                                                                   CCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGttt                               >  6:79468‑M1/1‑149 (MQ=255)                                                                                                                    ccgcctgtgtaaaagcagcgcggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGttt                               <  3:287602‑M2/118‑1 (MQ=255)                                                                                                                     GCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTg                              <  4:224188‑M1/148‑1 (MQ=255)                                                                                                                     GCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGt                             >  2:79723‑M1/1‑149 (MQ=255)                                                                                                                     GCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGCCAGTGGGGCGGATTCTACAGTGTGTGGTTTGt                             >  1:192486‑M1/1‑149 (MQ=255)                                                                                                                         tgctTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGt                         >  4:173615/1‑149 (MQ=255)                                                                                                                                        cggggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTCTGTGGTTTGTATGTCAAGCGCTAGGCtt           <  1:172873‑M2/138‑1 (MQ=255)                                                                                                                                           ggtttgttCTTACGAACATGGTTGCGGGATCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGa        <  7:209480‑M2/141‑1 (MQ=255)                                                                                                                                           ggtttgttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGa        <  4:254352‑M2/141‑1 (MQ=255)                                                                                                                                                 ttCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTc  <  3:224188‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACC‑GACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGTGTGGTTTGTATGTCAAGCGCTAGGCTTTGATTTTTC  >  NC_002947/1380381‑1380672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.