New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1964521 =	44 (0.900)	4 (0.090)	4/244	NT	8.6%	coding (733/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	1964562 =	44 (0.970)					coding (774/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

CGATTGGAAGGCCCGCATTGTCGCCATCAACGAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACA  >  NC_002947/1964373‑1964665                                                                                                                                                     |                                                                                                                                                 cGATTGGAAGGCCCGCATTGTCGCCATCAACGAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTg                                                                                                                                                  >  4:285045/1‑149 (MQ=255)    gccggattgccagtgggtcaactgctcggcggccgggttcatgtagccgatattgccctcgacatcggttgtaatcaccgcatccccgatggcctgcagggtaatctgcgcacgctctttttcttcctgcagggcgctggcaaagGc                                                                                                                                                 >  8:130651‑M1/146‑147 (MQ=255)             ccGCATTGTCGCCATCAACGAAGGCGTGA‑CCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTc                                                                                                                                     <  1:195667/149‑1 (MQ=255)                       aactgctcggcggccgggttcatgtagccgatatagccatcgacatcccttgtaatcaccgcatccccgatggcctgcagcgtaatctgcgcacgctctttttcttcctgcagggcgctggcaaagGCCTGGCGCCGCTCCAGCAAGCt                                                                                                                            <  1:41727‑M1/23‑1 (MQ=255)                         cATCAACGCTGGGGGTACCCCGGCGGCCAATGCCTTCAGTGATGCCTTGGGTGTAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAAACTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGTCGCCGCTCCATCAAGCTGt                                                                                                                          <  4:161793/149‑1 (MQ=255)                          aTCAACGAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGtt                                                                                                                         >  2:228132/1‑149 (MQ=255)                              aCGAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGcc                                                                                                                     <  3:59427/149‑1 (MQ=255)                                gAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGcc                                                                                                                     >  6:162882/1‑147 (MQ=255)                                gAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGATGGcc                                                                                                                     >  3:120292/1‑147 (MQ=255)                                      gTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGgc                                                                                                                                            >  5:83931/1‑118 (MQ=255)                                      gTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGgc                                                                                                                                            <  6:83931/118‑1 (MQ=255)                                       tGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAg                                                                                                            <  1:228132/149‑1 (MQ=255)                                       ggttcatgtagccgatattgccctcgacatcggttgtaatcaccgcatccccgatggcctgcagggtaatctgcgcacgctctttttcttcctgcagggcgctggcaaagGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAg                                                                                                            >  2:41727‑M1/111‑149 (MQ=255)                                         aCCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGc                                                                                                          >  5:69508/1‑149 (MQ=255)                                           cccGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCt                                                                                                        >  2:48224/1‑149 (MQ=255)                                             cggcggCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCttt                                                                                                      <  8:277164/149‑1 (MQ=255)                                                 ggcCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCa                                                                                                  <  2:31654/149‑1 (MQ=255)                                                           ttCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTg                                                                                          >  6:79885/1‑147 (MQ=255)                                                            tCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAg                                                                                       >  6:295854/1‑149 (MQ=255)                                                                       ttGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGaaaaa                                                                              >  8:177876/1‑147 (MQ=255)                                                                        ttgtaatcaccgcatccccgatggcctgcagggtaatctgcgcacgctctttttcttcctgcagggcgctggcaaagGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGc                                                                                                          >  2:134062‑M1/78‑118 (MQ=255)                                                                        ttgtaatcaccgcatccccgatggcctgcagggtaatctgcgcacgctctttttcttcctgcagggcgctggcaaagGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGc                                                                                                          <  1:134062‑M1/41‑1 (MQ=255)                                                                         gggTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAaga                                                                            <  5:295854/147‑1 (MQ=255)                                                                              aaGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTgcg                                                                     >  6:190970/1‑149 (MQ=255)                                                                               aGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTgcgc                                                                    <  1:122620/149‑1 (MQ=255)                                                                                   tCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGAt                                                                >  1:129154/1‑149 (MQ=255)                                                                                              gctgcGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAgg                                                     >  7:258209/1‑149 (MQ=255)                                                                                              gctgcGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAg                                                      <  3:285045/148‑1 (MQ=255)                                                                                              gctgcGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAg                                                      <  8:23984/148‑1 (MQ=255)                                                                                                  cGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCAt                                                 >  4:147466/1‑149 (MQ=255)                                                                                                          gctgATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATg                                         >  8:96511/1‑149 (MQ=255)                                                                                                           ctgATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGc                                        >  7:53461/1‑149 (MQ=255)                                                                                                             gATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGGGCAGATTACCCTGCAGGCCATCGGGGATGCgg                                      >  4:78284/1‑149 (MQ=255)                                                                                                              aTCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCgg                                      <  1:48224/148‑1 (MQ=255)                                                                                                              aTCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCgg                                      <  7:177876/148‑1 (MQ=255)                                                                                                               tCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGt                                     >  2:151471/1‑148 (MQ=255)                                                                                                                 aCCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGGGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAt                                  <  3:78284/149‑1 (MQ=255)                                                                                                                 aCCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAt                                  >  5:52663/1‑149 (MQ=255)                                                                                                                  ccAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAtt                                 <  8:258209/149‑1 (MQ=255)                                                                                                                  ccAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAt                                  >  5:101351/1‑148 (MQ=255)                                                                                                                       ctgctgACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAAc                            <  5:190970/149‑1 (MQ=255)                                                                                                                                 cAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAg                  >  6:223830/1‑149 (MQ=255)                                                                                                                                  aaTGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAgg                 <  8:53461/149‑1 (MQ=255)                                                                                                                                       tCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACaa                             <  2:73887/132‑1 (MQ=255)                                                                                                                                       tCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACaa                             >  1:73887/1‑132 (MQ=255)                                                                                                                                         cTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAatat          >  7:22201/1‑149 (MQ=255)                                                                                                                                         cTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAata           <  5:79885/148‑1 (MQ=255)                                                                                                                                          tGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATc         >  1:162305/1‑149 (MQ=255)                                                                                                                                            aTCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCg        <  6:52663/148‑1 (MQ=255)                                                                                                                                            aTCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAAAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCgg       <  5:162882/149‑1 (MQ=255)                                                                                                                                                ccATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTAc   <  8:22201/149‑1 (MQ=255)                                                                                                                                                 cATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACa  >  7:227245/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGATTGGAAGGCCCGCATTGTCGCCATCAACGAAGGCGTGACCCCGGCGGCCAAGGCCTTCAGTGATGCCTTGGGTGAAGGCTCGCGCATGTTGCTGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACA  >  NC_002947/1964373‑1964665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.