New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1974048	42 (0.860)	3 (0.060)	3/254	NT	6.8%	coding (58/1086 nt)	serC	3‑phosphoserine/phosphohydroxythreonine aminotransferase
	?	NC_002947	= 1974073	42 (0.890)					coding (83/1086 nt)	serC	3‑phosphoserine/phosphohydroxythreonine aminotransferase

GCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCTCCAACTAC  >  NC_002947/1973902‑1974194                                                                                                                                                   |                                                                                                                                                   gCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTg                                                                                                                                                  <  6:21836/149‑1 (MQ=255)   ttGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTg                                                                                                                                                  >  6:38283/1‑147 (MQ=255)      cccGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAgc                                                                                                                                              <  3:287004/148‑1 (MQ=255)              gCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAgg                                                                                                                                     >  2:271712/1‑149 (MQ=255)               cAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGc                                                                                                                                    <  1:271712/149‑1 (MQ=255)                       atcGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGc                                                                                                                            >  7:204313/3‑149 (MQ=255)                           aTCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATTCTgga                                                                                                                        >  6:140272‑M2/1‑146 (MQ=255)                                  aTGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCagcatctcggcctgtgcgcgctacaggacagcgtc                                                                                                                 <  3:179467‑M1/149‑36 (MQ=255)                                  aTGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGt                                                                                                                 >  6:204133/1‑149 (MQ=255)                                   tGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCagcatctcggcctgtgcgcgctgcaggacagcgtca                                                                                                                <  1:152767‑M1/149‑37 (MQ=255)                                   tGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCagcatctcggcctgtgcgcgctgcaggacagcgt                                                                                                                  >  2:152767‑M1/1‑113 (MQ=255)                                      aaTGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGc                                                                                                              >  2:255110/1‑148 (MQ=255)                                          tgGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAggg                                                                                                         <  5:204133/149‑1 (MQ=255)                                           ggCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGACGCGCTTCCTGACGATGTCATGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTgggcttcgc                                                                                                        >  7:227224/1‑142 (MQ=255)                                              cACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTg                                                                                                     >  8:52617/1‑149 (MQ=255)                                                  gAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCgg                                                                                                 <  5:38283/149‑1 (MQ=255)                                                         gATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATgg                                                                                           >  7:265876/1‑148 (MQ=255)                                                               gTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGa                                                                                     <  6:125147/148‑1 (MQ=255)                                                                   tATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACCCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCAt                                                                                >  5:180512/1‑149 (MQ=255)                                                                              gCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGcgacga                                                                     >  5:237967/1‑149 (MQ=255)                                                                                  gagTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTAc                                                                 >  1:89758/1‑149 (MQ=255)                                                                                  gagTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTAc                                                                 <  2:186613/149‑1 (MQ=255)                                                                                    gTGGTTGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGAGGCTGTCCTGCAGCGCGCACTGGGCGAGATGCTGGACTGGCGTGACAAGGGGTTGTCGGTGATGGATATGAGCGATCGCAGCGACGATTACg                                                                <  1:71423/148‑1 (MQ=255)                                                                                    gTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGt                                                               <  6:237967/149‑1 (MQ=255)                                                                                          gtgAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGt                                                                                                    >  2:212651/1‑106 (MQ=255)                                                                                          gtgAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGt                                                                                                    <  1:212651/106‑1 (MQ=255)                                                                                            gAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCg                                                       >  2:77001/1‑149 (MQ=255)                                                                                              gCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGcc                                                     <  1:255110/149‑1 (MQ=255)                                                                                                       ccTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGcc                                            >  3:55824/1‑149 (MQ=255)                                                                                                       ccTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGcc                                            >  2:147548/1‑149 (MQ=255)                                                                                                        cTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGcc                                            >  7:202318/1‑148 (MQ=255)                                                                                                              cTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAgg                                     <  2:89758/149‑1 (MQ=255)                                                                                                               ttCTGCGCAGGCCCTGCCGCGCATCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGa                                    >  1:209003/1‑149 (MQ=255)                                                                                                                  tGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCt                                 >  2:219977/1‑149 (MQ=255)                                                                                                                   gcgcAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGAtt                                                                   >  1:262313/1‑114 (MQ=255)                                                                                                                   gcgcAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGAtt                                                                   <  2:262313/114‑1 (MQ=255)                                                                                                                      cAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGt                             >  5:159804/1‑149 (MQ=255)                                                                                                                       aGGCCCTGCCGCGCTTCCTGACCCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTg                            <  6:180512/149‑1 (MQ=255)                                                                                                                        ggCCCTGCAGCGCTGCCTGACTCTGTCCTGCAGCGCGCACAGTCCTAGATGCTTGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCTAAAAGGCCGAGCAGGACCTGCGTGa                           <  8:202318/149‑1 (MQ=255)                                                                                                                               ccGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGGTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACctgctg                    >  1:217519/1‑149 (MQ=255)                                                                                                                                       ccTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGATAAGGCCGAGCAGGACCTGCGTGACCTGCTgtccgtc              <  8:85745/147‑1 (MQ=255)                                                                                                                                       ccTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTgtccgtcc             <  2:209003/148‑1 (MQ=255)                                                                                                                                       ccTGACGATGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTgtccgtcc             <  8:204313/148‑1 (MQ=255)                                                                                                                                        cTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTcccc           <  8:111394/149‑1 (MQ=255)                                                                                                                                         tGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTggacagcgtcaggaagcgcggcagggcctgcgcagaagttaaaggctcgtttgctcacatccactctcgctctgccaaatagaacaaaatcgtaattcggtggccacattcca          <  1:152767‑M2/149‑114 (MQ=255)                                                                                                                                         tGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAg                                      >  2:134634/1‑121 (MQ=255)                                                                                                                                         tGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAg                                      <  1:134634/121‑1 (MQ=255)                                                                                                                                          gACGCTGTCCTGTAGCGCGCACAGGCCGAGATGCTggacagcgtcaggaagcgcggcagggcctgcgcagaagttaaaggctcgtttgctcacatccactctcgctctgccaaatagaacaaaatcgtaattcggtggccacattccat         <  3:179467‑M2/149‑115 (MQ=255)                                                                                                                                           aCGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTggacagcgtcaggaagcgcggcagggcctgcgcagaagttaaaggctcgtttgctcacatccactctcgctctgccaaatagaacaaaatcgtaattcggtggccacattcca          >  2:152767‑M2/1‑34 (MQ=255)                                                                                                                                           aCGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCTcc        <  1:147548/149‑1 (MQ=255)                                                                                                                                           aCGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCTc         >  2:80089/1‑148 (MQ=255)                                                                                                                                                 tCCagaatctcggcctgtgcgcgctgcaggacagcgtcaggaagcgcggcagggcctgcgcagaagttaaaggctcgtttgctcacatccactctcgctctgccaaatagaacaaaatcgtaattcggtggccacattccatgcaggat  >  6:140272‑M1/1‑3 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTCCTGCAGCGCGCACAGGCCGAGATGCTGGACTGGCGTGGCAAGGGGTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGATTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCTCCAACTAC  >  NC_002947/1973902‑1974194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.