| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2414822 = | 38 (0.780) | 9 (0.190) | 5/258 | NT | 19.4% | coding (20/198 nt) | PP_2115 | hypothetical protein |
| ? | NC_002947 | = 4908082 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
ACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGT > NC_002947/2414674‑2414967 | cttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag > 1:221136‑M1/149‑149 (MQ=255)cttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag < 8:129276‑M1/1‑1 (MQ=255) ttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag < 5:88675‑M1/1‑1 (MQ=255) ccAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGc < 5:50473/149‑1 (MQ=17) tgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc < 8:233512‑M1/2‑1 (MQ=255) gatcttgatctttatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc > 4:174190‑M1/146‑147 (MQ=255) gatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag > 2:79465‑M1/146‑146 (MQ=255) gatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag > 5:60677‑M1/146‑146 (MQ=255) gatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggcattgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc < 5:155648‑M1/2‑1 (MQ=255) gatctggatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc < 7:276761‑M1/2‑1 (MQ=255) atcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAg < 7:39754‑M1/5‑1 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAgg < 3:225389‑M1/6‑1 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAgg < 5:244970‑M1/6‑1 (MQ=255) ttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGcc < 3:267583‑M1/8‑1 (MQ=255) ttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGcc < 3:272056‑M1/8‑1 (MQ=255) gatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGc > 4:174872‑M1/140‑146 (MQ=255) gcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCg < 6:88662/149‑1 (MQ=32) cccATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGcc < 1:232749/149‑1 (MQ=32) catcatCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCAGCCGGGGGCCGCAGCGCTTGACGGGCCTCCCTGCCCGTCCCCTGCCTTCGCCATGCCTGCGTTCGGcctc > 5:94069/1‑149 (MQ=11) tcatcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGcctcct < 6:95024/149‑1 (MQ=32) catcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTACCGGCAGGACCCCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCATGAAGGGCCTCCATGCCCGTCACCAGCCATCGCAAAGCCAGCGTTAGGcctc > 2:263666/1‑146 (MQ=11) tcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTGGGCCTCCTGaa < 7:6943/149‑1 (MQ=17) tCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGtt < 6:60640/118‑1 (MQ=32) tCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGtt > 5:60640/1‑118 (MQ=32) ttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAgg < 7:110091‑M1/6‑1 (MQ=255) ttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAgg > 8:110091‑M1/104‑109 (MQ=255) cGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaag < 6:276605/149‑1 (MQ=32) ggggTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaaga < 6:239383/149‑1 (MQ=32) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagat > 7:205459/1‑148 (MQ=32) aCTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaag < 3:238532/149‑1 (MQ=32) tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagat > 7:196344/1‑149 (MQ=32) gcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCGGAGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatc < 2:136018‑M1/56‑1 (MQ=255) gccttgcgaaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatc < 5:92687‑M1/62‑1 (MQ=255) cagCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatc < 1:263666/147‑1 (MQ=17) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatc > 2:80651/1‑145 (MQ=32) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGt < 4:68390/88‑1 (MQ=33) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGt < 4:171974/88‑1 (MQ=33) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGt > 3:68390/1‑88 (MQ=33) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGt > 3:171974/1‑88 (MQ=33) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagat > 3:222353/1‑148 (MQ=32) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaag < 1:80651/149‑1 (MQ=32) aggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatc < 3:197638‑M1/74‑1 (MQ=255) gtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaag < 3:144183‑M1/53‑1 (MQ=255) gtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaag > 4:144183‑M1/70‑122 (MQ=255) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatca < 8:205459/149‑1 (MQ=32) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatca < 8:196344/149‑1 (MQ=32) cgcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatc < 4:262342/149‑1 (MQ=32) gAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaaga < 7:61019/149‑1 (MQ=33) ggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCgcgaagatcaagatcaagatcaagatcaagatcaagatcaagctcaagatcaagatcaacgg < 3:285682‑M1/91‑4 (MQ=255) aTCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaag < 1:228684/127‑1 (MQ=32) aTCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaag > 2:228684/1‑127 (MQ=32) ggatGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAagatcaagatcaagatcga < 4:291820/146‑1 (MQ=255) cTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTAGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAATATCAagatcaagatcaagatcgag < 6:94069/148‑1 (MQ=255) aagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAagatcaagatcaagatcgag > 6:92687‑M1/48‑148 (MQ=255) tCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAagatcaagatcaagatcgagatcaagat > 3:257321/1‑148 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAagatcaagatcaagatcgagatcaagatc > 3:129380/1‑144 (MQ=255) gtGACGGGCATGGATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAagatcaagatcaagatcgagatcaagatcaagatc > 8:266788/2‑148 (MQ=255) gggCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaagatcaagatcgagatcaagatcaagatcgagat > 8:168556/1‑148 (MQ=255) aTCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGAtcaagatcgagatcaagatcaagatcgagatcaaga < 4:257321/149‑1 (MQ=255) aTCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGAtcaagatcgagatcaagatcaagatcgagatcaaga < 3:85474/149‑1 (MQ=255) cATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAgc < 7:168556/148‑1 (MQ=255) tCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGTTCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGAGCTGGGttt > 4:292230/1‑149 (MQ=255) cACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGttt > 8:139002/1‑148 (MQ=255) cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGt < 4:222353/147‑1 (MQ=255) | ACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGT > NC_002947/2414674‑2414967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |