| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2414822 = | 38 (0.780) | 9 (0.190) | 5/258 | NT | 19.4% | coding (20/198 nt) | PP_2115 | hypothetical protein |
| ? | NC_002947 | = 4908082 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
GATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAA > NC_002947/4907944‑4908222 | gatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGc < 7:251676/146‑1 (MQ=32) gatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAg > 3:175637/1‑149 (MQ=32) gatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGAcc > 1:303763/1‑149 (MQ=32) tcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGATGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGAcccc > 5:16624/1‑149 (MQ=17) gatcttgatcttCGCGATTTCAGGTGGCCGACCGCCGGCCTTGGGGAGGCTGGTGAGGGGCATGGATGCCCGTCAAGGGCGGAGGCCCCAGTAGGGGGCCTTGGGCGCGGTCCTGCGGGGAGCGAGGCCGGAGTGAGGGGACCCCg < 4:175637/146‑1 (MQ=11) gatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑agcgcagc > 6:134850/1‑149 (MQ=32) tcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑agcgcagcg > 3:71998/1‑148 (MQ=32) tcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑agcgcagcg > 3:79113/1‑148 (MQ=32) gaggCCGAACGCAGGCCTTGCGGCGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCTGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑agcgcagcgc < 3:260775/134‑1 (MQ=17) tggCCTAACGCAGGCGTTGGGGTGGCTGGTTTGGGGTTTTGATGCCGGTAATGCGGTTTGGCCCCTGGTTGGGGCTTTGGGCGGGGTCGTGCGGGGAGCGTGGCGGGTGTGTGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATgg < 4:71998/148‑1 (MQ=2) tggCCGAACGCAGGCCTTGCGGTGGCAGGTGACGGGCTTGGTTGCCGGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATgg < 4:79113/148‑1 (MQ=255) gCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATgg > 3:188809/1‑147 (MQ=32) gAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAgg > 3:89544/1‑131 (MQ=32) cGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAg > 5:219021/1‑149 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGgatgat < 1:37225/136‑1 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGgatgat > 2:37225/1‑136 (MQ=32) tGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg > 4:110938/1‑149 (MQ=32) cagcgcttGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTAc > 6:85204/8‑149 (MQ=255) cgcttGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGt > 1:160937/5‑143 (MQ=12) ggTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACttttt < 6:219021/149‑1 (MQ=32) tGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCgg < 6:79744/113‑1 (MQ=12) tGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCgg > 5:79744/1‑113 (MQ=12) gggCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcgcg > 8:18035/1‑149 (MQ=32) gcatgcatGCCCGTAACGGGCTGCGGCCCCAGTTTGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACttttt < 6:12411/141‑1 (MQ=11) gCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACttttt > 5:12411/1‑141 (MQ=32) atccaTGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTg < 5:85204/145‑1 (MQ=17) tGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa < 7:18035/149‑1 (MQ=32) ggATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa > 8:183429/1‑148 (MQ=32) gATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTg > 1:202422/1‑137 (MQ=32) gATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTg < 2:202422/137‑1 (MQ=32) gCCCGTCAAGCGCTGATGCCCCAGGATGTGGCCTTCGGCGCGGTCATGACGCGAGCGAGGCCGGAGAGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGTGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaaa > 8:146001/1‑148 (MQ=11) cccATCAAGCGCTGAGGCCGCAGTATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaaaa < 1:245139/148‑1 (MQ=12) cGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGt < 5:134850/149‑1 (MQ=32) aaGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACt > 8:5081/1‑149 (MQ=32) cgcTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGc > 3:269466/1‑149 (MQ=32) gcTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGcc > 1:203087/1‑149 (MQ=32) gcTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGcc > 8:66124/1‑149 (MQ=32) cgaaGGCCCCATCCTGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCg > 4:175624/4‑149 (MQ=255) ccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGAGCAGCGCCGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAggg > 1:242220/1‑149 (MQ=11) ccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGcc < 2:203087/149‑1 (MQ=32) ccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTATTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGc > 1:145746/1‑148 (MQ=17) gCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCa < 6:141801/149‑1 (MQ=32) ccTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCaa < 3:110938/149‑1 (MQ=32) tCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAggg > 8:124846/1‑133 (MQ=32) tCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAggg < 7:124846/133‑1 (MQ=32) gcgcGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCtt < 7:5081/149‑1 (MQ=32) cgcgGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑T‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTc < 3:175624/149‑1 (MQ=17) gTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTa < 7:66124/149‑1 (MQ=35) gtGCGGGGAGGGTGGGCGTTGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGaa < 2:303763/148‑1 (MQ=11) | GATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCG‑G‑AGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAA > NC_002947/4907944‑4908222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |