New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2432060	32 (0.650)	3 (0.060)	3/252	NT	8.7%	intergenic (‑104/‑69)	PP_2130/uup	lytic transglycosylase/ABC transporter ATP‑binding protein
	?	NC_002947	= 2432095	32 (0.680)					intergenic (‑139/‑34)	PP_2130/uup	lytic transglycosylase/ABC transporter ATP‑binding protein

CGGGCAGTTGAACCATGGGAAGTGTCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTGGCAGATCG  >  NC_002947/2431917‑2432207                                                                                                                                                |                                                                                                                                                    cGGGCAGTTTAACCATGGTAAGTGTCGGCGGAGCCAGCACTATTGAAGGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGAAGTCGCCAGGTGCCTACCGGTTg                                                                                                                                                <  7:193011/149‑1 (MQ=255)      aGTTGAACCATGGGAAGTGTCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTg                                                                                                                                           >  3:224698/1‑149 (MQ=255)        ttGAACCATGGGAAGTGTCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGc                                                                                                                                         >  6:281880/1‑149 (MQ=255)              cATGGGAAGTGTCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGc                                                                                                                                   >  3:279210/1‑149 (MQ=255)                     aGTGGCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGaa                                                                                                                            <  6:44026/149‑1 (MQ=255)                            gcggAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCtgacttggccttcgacggcatccgccaggcc                                                                                                                      >  2:146819‑M1/1‑117 (MQ=255)                              ggAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGcc                                                                                                                                             <  7:143669/123‑1 (MQ=255)                              ggAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGcc                                                                                                                                             >  8:143669/1‑123 (MQ=255)                                 gCCAGCACTATTGAAAGCTGTTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAgg                                                                                                                <  7:78140‑M2/149‑3 (MQ=255)                                  ccAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAggt                                                                                                               >  2:260987‑M2/1‑146 (MQ=255)                                       aCTATTGACAGCTATTTCCTTCGCTTTGCTGTTTGCCGGCAGTGCGTGAAAGCACTCTGCTTGTATCGGCAAATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCtgactttgccttcgacggcatccgccaggccaaccggtaggca                                                                                                          <  6:125285‑M1/149‑44 (MQ=255)                                       aCTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAAt                                                                                                          <  5:281880/149‑1 (MQ=255)                                             gAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCtgacttggccttcgacggcatccgccaggccaaccggtaggcacctgg                                                                                                     <  1:146819‑M1/148‑49 (MQ=255)                                                   tATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCAGTCGAAGGCCAAGTCAggta                                                                                                              <  4:179098‑M2/133‑5 (MQ=255)                                                        ccTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATgg                                                                                         <  4:279210/149‑1 (MQ=255)                                                        ccTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATg                                                                                          >  4:95765/1‑148 (MQ=255)                                                               ttagctGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGgagagatc                                                                                  >  3:207694/1‑145 (MQ=255)                                                               ttagctGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGga                                                                                        <  4:207694/143‑1 (MQ=255)                                                               ttagctGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGaa                                                                                  >  1:251096/1‑149 (MQ=255)                                                                 agctGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACa                                                                                >  5:297137/1‑149 (MQ=255)                                                                  gctGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACAt                                                                               <  8:78140/149‑1 (MQ=255)                                                                    tGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGa                                                                             >  6:241914/1‑149 (MQ=255)                                                                      tttGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGAcc                                                                           <  6:71230/149‑1 (MQ=255)                                                                                gTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAAt                                                                 >  1:59924/1‑149 (MQ=255)                                                                                   ggTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTc                                                               <  6:297137/148‑1 (MQ=255)                                                                                     tGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGc                                                            >  8:122121/1‑149 (MQ=255)                                                                                       aaaGCACTGTGGTTGTATCGGGATTTTAAGGGCGACCTGATGTCGCCCCGGGCCAACCGGTTCCCCTGGCGGATGGCGTGGAAGGCCAAGTGAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTTCTCAATTTGAGCgc                                                          <  6:267896/149‑2 (MQ=255)                                                                                         aGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGAtg                                                        >  2:275427/1‑149 (MQ=255)                                                                                                        tCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCg                                         >  2:77900/1‑149 (MQ=255)                                                                                                            gATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTcc                                                   >  5:302436/1‑135 (MQ=255)                                                                                                            gATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTcc                                                   <  6:302436/135‑1 (MQ=255)                                                                                                            gATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGgcgc                                     <  4:224698/149‑1 (MQ=255)                                                                                                                ttAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCAt                                  <  7:122121/148‑1 (MQ=255)                                                                                                                        gACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGACGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCgctgct                         >  8:223440/1‑149 (MQ=255)                                                                                                                        gACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCgctgc                          <  5:241914/148‑1 (MQ=255)                                                                                                                                    ccAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAggtaggcacctggcgacatctggtcgaacttaatatcccgatacaagcacagtgctttcacccactgccggcaaacagctaagctaaggcaatagctttc              <  1:146819‑M2/148‑101 (MQ=255)                                                                                                                                    ccAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTc             <  2:251096/149‑1 (MQ=255)                                                                                                                                      aGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCt           <  1:77900/149‑1 (MQ=255)                                                                                                                                        gTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTgg         <  1:275427/149‑1 (MQ=255)                                                                                                                                         tGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTGGc        <  3:95765/149‑1 (MQ=255)                                                                                                                                         tGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCAAAGTCAggtaggcacctggcgacatctggtcgaacttaatttgccgatacaagcagagtgctttcacgcactgccggcaaacagcaaagcgaaggaaatagctgtcaatagt        <  6:125285‑M2/149‑107 (MQ=255)                                                                                                                                            cTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTgg         >  3:164472/1‑145 (MQ=255)                                                                                                                                             tACCtgacttggccttcgactgcatccgccaggccaaccggtaggcacctggcgacatctggtcgaacttaatatcccgatacaagcacagtgctttcacccactgccggcaaacagctaagctaaggcaata                    <  4:179098‑M1/133‑130 (MQ=255)                                                                                                                                             tACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTgg         >  7:115425/1‑144 (MQ=255)                                                                                                                                              aCCtgacttggccttcgacggcatccgccaggccaaccggtaggcacctggcgacatctggtcgaacttaatatcccgatacaagcacagtgctttcacccactgccggcaaacagctaagctaaggcaatagctttcaatagtgctgg   >  2:260987‑M1/1‑3 (MQ=255)                                                                                                                                               cctgacttggccttcgacggcatccgccaggccaaccggtaggcacctggcgacatctggtcgaacttaatatcccgatacaagcacagtgctttcacccactgccggcaaacagctaagctaaggcaacagctttcaatagtgctggc  <  7:78140‑M1/149‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    CGGGCAGTTGAACCATGGGAAGTGTCGGCGGAGCCAGCACTATTGAAAGCTATTGCCTTAGCTTAGCTGTTTGCCGGCAGTGGGTGAAAGCACTGTGCTTGTATCGGGATATTAAGTTCGACCAGATGTCGCCAGGTGCCTACCGGTTGGCCTGGCGGATGCCGTCGAAGGCCAAGTCAGGTAGAATGCGCGCCCGATTTATGGAGACGAACATGACCCTGCTCAAATTCAGCGATGTGTCCCTCGCATTCGGCGCCATGCCGCTGCTGGACAAAGTGTCCTGGCAGATCG  >  NC_002947/2431917‑2432207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.