New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2528340	44 (0.900)	3 (0.060)	3/252	NT	6.2%	coding (241/774 nt)	PP_2217	enoyl‑CoA hydratase
	?	NC_002947	= 2528353	49 (1.040)					coding (254/774 nt)	PP_2217	enoyl‑CoA hydratase

TCGGCGAGATCAACCAGGCTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGT  >  NC_002947/2528197‑2528483                                                                                                                                                |                                                                                                                                                tCGGCGAGATCAACCAGGCTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACGGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCgacgac                                                                                                                                            >  3:286841/1‑149 (MQ=255)    gCGAGATCAACCAGGCTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTg                                                                                                                                         >  2:168776/1‑149 (MQ=255)    gCGAGATCAACCAGGCTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTg                                                                                                                                         >  5:17232/1‑149 (MQ=255)                   ctctGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCTGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGAc                                                                                                                          >  3:38461/1‑149 (MQ=255)                        gACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCAt                                                                                                                     >  1:306178/1‑149 (MQ=255)                         aCCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCTGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATc                                                                                                                    <  4:38461/149‑1 (MQ=255)                             gCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTGGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGcc                                                                                                                 >  1:62741/1‑148 (MQ=255)                             gCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGTCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGcc                                                                                                                 >  6:288988/1‑148 (MQ=255)                                   gcgcGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACAGCATCGCCAATCGcc                                                                                                          >  4:206397/1‑149 (MQ=255)                                      cgACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGCTGAACAGGTCGTcgacgtagatctgcggg                                                                                                                   <  1:220678‑M2/137‑18 (MQ=255)                                      cgACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGCTGAACAGGTCGTcgacgtagatctgcggg                                                                                                                   >  2:220678‑M2/1‑120 (MQ=255)                                         cccGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGc                                                                                                    <  6:34390/149‑1 (MQ=255)                                          ccGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGcc                                                                                                   <  1:168776/149‑1 (MQ=255)                                           cGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCg                                                                                                  <  5:204475/149‑1 (MQ=255)                                             aaCATCGGCTGCGTGGTGCTGACGGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGAt                                                                                                <  4:286841/149‑1 (MQ=255)                                               cATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCa                                                                                              <  8:54807/149‑1 (MQ=255)                                                 tCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCAtt                                                                                            >  3:117237/1‑149 (MQ=255)                                                               cTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTg                                                                               <  6:698/148‑1 (MQ=255)                                                                tGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGa                                                                             >  3:98669/1‑149 (MQ=255)                                                                 gACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAAGACCCGCAGCTCTACGTCGACGGGCTGTTCAGCGAGGCTGACGGCATCGCCAATCGCGGTAGGCGGCTGAGTGCTGGGGTGTGGGGAt                                                                            >  6:224865/1‑149 (MQ=255)                                                                  aCAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGAAGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                           >  8:106574/1‑149 (MQ=255)                                                                    aGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTg                                                                         >  3:217844/1‑149 (MQ=255)                                                                     ggCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGTCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGc                                                                        <  5:288988/149‑1 (MQ=255)                                                                      gCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGcc                                                                       <  3:206397/149‑1 (MQ=255)                                                                       cTCGGCCAAAGCCTTTGCCGCTGGCGCCGAAATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCt                                                                      <  4:33539/149‑1 (MQ=255)                                                                          ggCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTgg                                                                   >  5:310215/1‑149 (MQ=255)                                                                             cAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGa                                                                                                 >  5:101755/1‑116 (MQ=255)                                                                             cAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGa                                                                                                 <  6:101755/116‑1 (MQ=255)                                                                              aaaGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGctgaacaggtcgtcgacgtagatct                                                                                                                        <  6:277623‑M1/92‑26 (MQ=255)                                                                              aaaGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcgg                                                               <  6:17232/149‑1 (MQ=255)                                                                                 gCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcggcgg                                                            <  3:253807/149‑1 (MQ=255)                                                                                           cTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCACATCGCCAATCGCCGTAGGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTCgtcggcgg                                                            >  8:204655/1‑139 (MQ=255)                                                                                           cTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCACATCGCCAATCGCCGTACGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcggcgg                                                            <  7:204655/139‑1 (MQ=255)                                                                                                 ccGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatg                                            <  6:310215/149‑1 (MQ=255)                                                                                                  cGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatga                                           <  2:306178/149‑1 (MQ=255)                                                                                                   gACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatgat                                          <  4:217844/149‑1 (MQ=255)                                                                                                       tCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGc                                      <  4:117237/149‑1 (MQ=255)                                                                                                         aaGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGa                                    >  3:227415/1‑149 (MQ=255)                                                                                                           ggAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACt                                  >  8:81362/1‑149 (MQ=255)                                                                                                                      aGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                           <  7:6912/97‑1 (MQ=255)                                                                                                                      aGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                           >  8:6912/1‑97 (MQ=255)                                                                                                                       gCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTg                      <  7:27368/149‑1 (MQ=255)                                                                                                                        cTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGc                     <  2:62741/149‑1 (MQ=255)                                                                                                                           cAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCt                                                          >  4:3204/1‑109 (MQ=255)                                                                                                                           cAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCt                                                          <  3:3204/109‑1 (MQ=255)                                                                                                                             aTACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCAGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGAc                 >  2:215412/1‑148 (MQ=255)                                                                                                                                cccGCAGATCTACGTCGacgacctgttcagcgacgtagatctgcgggtattgcagctcggccatttccttgatgtcggcgccagcggcaaaggctttggccgagcctgtcagcaccacgcagccgatgttcgggtcg                         >  2:220678‑M1/1‑17 (MQ=255)                                                                                                                                cccGCAGATCTACGTCGacgacctgttcagcgacgtagatctgcgggtattgcagctcggccatttccttgatgtcggcgccagcggcaaaggctttggccgagcctgtcagcaccacgcagccgatgttcgggtcg                         <  1:220678‑M1/137‑121 (MQ=255)                                                                                                                                cccGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGGCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATg             <  7:106574/149‑1 (MQ=255)                                                                                                                                cccGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATg             <  7:81362/149‑1 (MQ=255)                                                                                                                                     aGATCTACGTCGACGACCTGTTCAGcgacgtagatctgcgggtattgcagctcggccatttccttgatgtcggcgccagcggcaaaggcttt                                                                 <  6:277623‑M2/92‑68 (MQ=255)                                                                                                                                            cGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTg    <  4:227415/146‑1 (MQ=255)                                                                                                                                            cGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGt  >  7:51370/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                TCGGCGAGATCAACCAGGCTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGT  >  NC_002947/2528197‑2528483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.