New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2528340	44 (0.900)	3 (0.060)	3/252	NT	6.2%	coding (241/774 nt)	PP_2217	enoyl‑CoA hydratase
	?	NC_002947	= 2528353	49 (1.040)					coding (254/774 nt)	PP_2217	enoyl‑CoA hydratase

CTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGAAATCAACCT  >  NC_002947/2528215‑2528500                                                                                                                                           |                                                                                                                                                    ctctGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCTGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGAc                                                                                                                                           >  3:38461/1‑149 (MQ=255)      gACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCAt                                                                                                                                      >  1:306178/1‑149 (MQ=255)       aCCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCTGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATc                                                                                                                                     <  4:38461/149‑1 (MQ=255)           gCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTGGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGcc                                                                                                                                  >  1:62741/1‑148 (MQ=255)           gCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGTCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGcc                                                                                                                                  >  6:288988/1‑148 (MQ=255)                 gcgcGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACAGCATCGCCAATCGcc                                                                                                                           >  4:206397/1‑149 (MQ=255)                    cgACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGCTGAACAGGTCGTcgacgtagatctgcggg                                                                                                                                    <  1:220678‑M2/137‑18 (MQ=255)                    cgACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGCTGAACAGGTCGTcgacgtagatctgcggg                                                                                                                                    >  2:220678‑M2/1‑120 (MQ=255)                       cccGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGc                                                                                                                     <  6:34390/149‑1 (MQ=255)                        ccGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGcc                                                                                                                    <  1:168776/149‑1 (MQ=255)                         cGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCg                                                                                                                   <  5:204475/149‑1 (MQ=255)                           aaCATCGGCTGCGTGGTGCTGACGGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGAt                                                                                                                 <  4:286841/149‑1 (MQ=255)                             cATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCa                                                                                                               <  8:54807/149‑1 (MQ=255)                               tCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCAtt                                                                                                             >  3:117237/1‑149 (MQ=255)                                             cTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTg                                                                                                <  6:698/148‑1 (MQ=255)                                              tGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGa                                                                                              >  3:98669/1‑149 (MQ=255)                                               gACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAAGACCCGCAGCTCTACGTCGACGGGCTGTTCAGCGAGGCTGACGGCATCGCCAATCGCGGTAGGCGGCTGAGTGCTGGGGTGTGGGGAt                                                                                             >  6:224865/1‑149 (MQ=255)                                                aCAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGAAGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                                            >  8:106574/1‑149 (MQ=255)                                                  aGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTg                                                                                          >  3:217844/1‑149 (MQ=255)                                                   ggCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGTCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGc                                                                                         <  5:288988/149‑1 (MQ=255)                                                    gCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGcc                                                                                        <  3:206397/149‑1 (MQ=255)                                                     cTCGGCCAAAGCCTTTGCCGCTGGCGCCGAAATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCt                                                                                       <  4:33539/149‑1 (MQ=255)                                                        ggCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTgg                                                                                    >  5:310215/1‑149 (MQ=255)                                                           cAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGa                                                                                                                  <  6:101755/116‑1 (MQ=255)                                                           cAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGa                                                                                                                  >  5:101755/1‑116 (MQ=255)                                                            aaaGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcgg                                                                                <  6:17232/149‑1 (MQ=255)                                                               gCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcggcgg                                                                             <  3:253807/149‑1 (MQ=255)                                                                         cTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCACATCGCCAATCGCCGTAGGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTCgtcggcgg                                                                             >  8:204655/1‑139 (MQ=255)                                                                         cTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCACATCGCCAATCGCCGTACGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGggcggcgg                                                                             <  7:204655/139‑1 (MQ=255)                                                                               ccGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatg                                                             <  6:310215/149‑1 (MQ=255)                                                                                cGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatga                                                            <  2:306178/149‑1 (MQ=255)                                                                                 gACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCgatgat                                                           <  4:217844/149‑1 (MQ=255)                                                                                     tCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGc                                                       <  4:117237/149‑1 (MQ=255)                                                                                       aaGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGa                                                     >  3:227415/1‑149 (MQ=255)                                                                                         ggAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACt                                                   >  8:81362/1‑149 (MQ=255)                                                                                                    aGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                                            >  8:6912/1‑97 (MQ=255)                                                                                                    aGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGAtt                                                                                            <  7:6912/97‑1 (MQ=255)                                                                                                     gCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTg                                       <  7:27368/149‑1 (MQ=255)                                                                                                      cTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGc                                      <  2:62741/149‑1 (MQ=255)                                                                                                         cAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCt                                                                           <  3:3204/109‑1 (MQ=255)                                                                                                         cAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCt                                                                           >  4:3204/1‑109 (MQ=255)                                                                                                           aTACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCAGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGAc                                  >  2:215412/1‑148 (MQ=255)                                                                                                              cccGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGGCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATg                              <  7:106574/149‑1 (MQ=255)                                                                                                              cccGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATg                              <  7:81362/149‑1 (MQ=255)                                                                                                                   aGATCTACGTCGACGACCTGTTCAGcgacgtagatctgcgggtattgcagctcggccatttccttgatgtcggcgccagcggcaaaggcttt                                                                                  <  6:277623‑M2/92‑68 (MQ=255)                                                                                                                          cGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTg                     <  4:227415/146‑1 (MQ=255)                                                                                                                          cGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGt                   >  7:51370/1‑148 (MQ=255)                                                                                                                                 gacCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCgg            >  4:111941/1‑148 (MQ=255)                                                                                                                                  acCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGa           >  3:94908/1‑148 (MQ=255)                                                                                                                                   ccTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGaaa         >  6:301988/1‑149 (MQ=255)                                                                                                                                   ccTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGaaa         <  4:98669/149‑1 (MQ=255)                                                                                                                                      gTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAAt                        >  6:183012/1‑131 (MQ=255)                                                                                                                                      gTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAAt                        <  5:183012/131‑1 (MQ=255)                                                                                                                                       ttCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGAAATCaa     >  8:100428/1‑149 (MQ=255)                                                                                                                                       ttCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGAAATCaa     >  4:44701/1‑149 (MQ=255)                                                                                                                                          aGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGAAATCAACCt  >  5:129855/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                    CTCTGGACCAGCTCGAGCGCGACCCGAACATCGGCTGCGTGGTGCTGACAGGCTCGGCCAAAGCCTTTGCCGCTGGCGCCGACATCAAGGAAATGGCCGAGCTGCAATACCCGCAGATCTACGTCGACGACCTGTTCAGCGACGCTGACCGCATCGCCAATCGCCGTAAGCCGATCATTGCTGCTGTGTCTGGATTTGCCTTGGGCGGCGGCTGTGAGCTGGCGATGATGTGCGACTTTATCCTCGCTGCGGACAATGCCAAATTTGGTCAACCGGAAATCAACCT  >  NC_002947/2528215‑2528500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.