New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2678441	33 (0.670)	4 (0.090)	4/252	NT	9.0%	coding (782/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	= 2678519	49 (1.040)					coding (860/1320 nt)	PP_2348	sensor histidine kinase

GTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTG  >  NC_002947/2678296‑2678589                                                                                                                                                  |                                                                                                                                                     gtggGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGa                                                                                                                                                   <  1:111739/149‑1 (MQ=255)  tggGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAg                                                                                                                                                  <  1:9172/149‑1 (MQ=255)      gCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTgc                                                                                                                                              <  3:253293/149‑1 (MQ=255)        aGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCg                                                                                                                                                     >  8:174976/1‑140 (MQ=255)        aGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCg                                                                                                                                                     <  7:174976/140‑1 (MQ=255)          aTCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTgcgcgc                                                                                                                                          >  1:273818/1‑149 (MQ=255)              aCCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTgcgcgc                                                                                                                                          >  6:142317/1‑145 (MQ=255)              aCCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTgcgcgc                                                                                                                                          <  5:142317/145‑1 (MQ=255)               ccACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCaaa                                                                                                                                     >  5:237905/1‑149 (MQ=255)                cACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAAt                                                                                                                                    >  6:6488/1‑149 (MQ=255)                  cTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCagacgtgcacggttcagctc                                                                                                                                  >  5:69357‑M1/1‑129 (MQ=255)                     gCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGa                                                                                                                                                   >  4:67925/1‑129 (MQ=255)                     gCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGa                                                                                                                                                   <  3:67925/129‑1 (MQ=255)                      cTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGt                                                                                                                                <  8:250542/147‑1 (MQ=255)                      cTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGt                                                                                                                                >  7:250542/1‑147 (MQ=255)                       ttAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAg                                                                                                                             >  8:283822/1‑149 (MQ=255)                           ccATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGt                                                                                                                         >  3:200722/1‑149 (MQ=255)                           ccATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCC                                                                                                                                                      >  3:42036‑M1/1‑120 (MQ=255)                           ccATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCC                                                                                                                                                      <  4:42036‑M1/120‑1 (MQ=255)                                 cGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTgcagc                                                                                                                   <  6:159972/149‑1 (MQ=255)                                    aGACAGCCTGCGCCGCTCACGCAATGCCCTCTGTAACCTCGTCCATGCGCTGAAGACGCCGCTTGCGGTGTTGCTTAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGa                                                                                                                <  5:287608/149‑1 (MQ=255)                                       cAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTc                                                                                                             <  2:273818/149‑1 (MQ=255)                                              cgccgcTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAgc                                                                                                       <  1:167763/148‑1 (MQ=255)                                                      aCGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGgcgc                                                                                              <  7:150246/149‑1 (MQ=255)                                                      aCGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGgc                                                                                                <  6:91726/147‑1 (MQ=255)                                                           aTGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAg                                                                                         >  6:112999/1‑149 (MQ=255)                                                            tGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGc                                                                                        <  4:200722/149‑1 (MQ=255)                                                                 tCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCagacgtgcacggttcagctcgcgcgccaggcgctcctgaatctgctgcaactgctcacgcatttgcg                                                                                   >  5:182354‑M1/1‑82 (MQ=255)                                                                       aCCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGc                                                                              <  5:6488/148‑1 (MQ=255)                                                                          tCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGgcg                                                                                               >  2:277012/1‑128 (MQ=255)                                                                          tCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGgcg                                                                                               <  1:277012/128‑1 (MQ=255)                                                                            ggCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCt                                                                        <  7:283822/149‑1 (MQ=255)                                                                                aTGCGCTGAAGACGCCGTTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTgg                                                                      <  2:132809‑M2/147‑3 (MQ=255)                                                                                   cgcTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCagacgtgcacggttcagctcgcgcgccaggcgctcctgaatctgctgcaactgctcacgcatttgcgcgcgcacctccggcaga                                                                  <  6:69357‑M1/148‑85 (MQ=255)                                                                                    gcTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCagacgtgcacggttcagctcgcgcgccaggcgctcctgaatctgctgcaactgctcacgcatttgcgcgcgcacctccggcagacc                                                                <  6:182354‑M1/149‑87 (MQ=255)                                                                                        aaGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGAt                                                              <  5:259868/147‑1 (MQ=255)                                                                                                                   cTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGa                                 >  3:73790/1‑149 (MQ=255)                                                                                                                   cTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGa                                 >  3:88096/1‑149 (MQ=255)                                                                                                                           cAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAAc                         >  2:57303/1‑149 (MQ=255)                                                                                                                                  cGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCggg                  <  1:57303/149‑1 (MQ=255)                                                                                                                                  cGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCggg                  <  5:112999/149‑1 (MQ=255)                                                                                                                                    ccTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGt                >  1:148959/1‑149 (MQ=255)                                                                                                                                     cTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGtt               <  1:132809/149‑1 (MQ=255)                                                                                                                                     cTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGCGGtt               >  5:137936/1‑149 (MQ=255)                                                                                                                                       gCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGc             >  4:152017/1‑149 (MQ=255)                                                                                                                                        cAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCt            >  5:59702/1‑149 (MQ=255)                                                                                                                                           ggTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagc         <  6:182354‑M2/149‑64 (MQ=255)                                                                                                                                             tCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcg        <  6:69357‑M2/148‑65 (MQ=255)                                                                                                                                              cTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCgggtg      >  1:108802/1‑147 (MQ=255)                                                                                                                                                 ccagacgtgcacggttcagctcgcgcgccaggcgctcctgaatctgctgcaactgctcacgcatttgcgcgcgcacctccggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccaacggcgtcttcagcgcat     <  2:132809‑M1/147‑146 (MQ=255)                                                                                                                                                 ccGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGAc      <  4:88096/146‑1 (MQ=255)                                                                                                                                                  cGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAAGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGCGTTGCTCGGGACCTTg  >  1:214925/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTG  >  NC_002947/2678296‑2678589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.