New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2678441	33 (0.670)	4 (0.090)	4/252	NT	9.0%	coding (782/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	= 2678519	49 (1.040)					coding (860/1320 nt)	PP_2348	sensor histidine kinase

GGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCATGGGACCGCG  >  NC_002947/2678371‑2678662                                                                                                                                                     |                                                                                                                                                ggCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCt                                                                                                                                                 <  7:283822/149‑1 (MQ=255)     aTGCGCTGAAGACGCCGTTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTgg                                                                                                                                               <  2:132809‑M2/147‑3 (MQ=255)             aaGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGAt                                                                                                                                       <  5:259868/147‑1 (MQ=255)                                        cTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGa                                                                                                          >  3:88096/1‑149 (MQ=255)                                        cTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGa                                                                                                          >  3:73790/1‑149 (MQ=255)                                                cAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAAc                                                                                                  >  2:57303/1‑149 (MQ=255)                                                       cGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCggg                                                                                           <  5:112999/149‑1 (MQ=255)                                                       cGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCggg                                                                                           <  1:57303/149‑1 (MQ=255)                                                         ccTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGt                                                                                         >  1:148959/1‑149 (MQ=255)                                                          cTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGtt                                                                                        <  1:132809/149‑1 (MQ=255)                                                          cTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGCGGtt                                                                                        >  5:137936/1‑149 (MQ=255)                                                            gCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGc                                                                                      >  4:152017/1‑149 (MQ=255)                                                             cAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCt                                                                                     >  5:59702/1‑149 (MQ=255)                                                                ggTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagc                                                                                  <  6:182354‑M2/149‑64 (MQ=255)                                                                  tCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcg                                                                                 <  6:69357‑M2/148‑65 (MQ=255)                                                                   cTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCgggtg                                                                               >  1:108802/1‑147 (MQ=255)                                                                      ccGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGAc                                                                               <  4:88096/146‑1 (MQ=255)                                                                       cGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAAGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGCGTTGCTCGGGACCTTg                                                                           >  1:214925/1‑149 (MQ=255)                                                                              gcgcgcgcAAATGCGTGAGCAGTTGCAGCAGATTCTGGAGCGCCTGGCGCGCGAGCTGCACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGa                                                                    >  1:50638/1‑149 (MQ=255)                                                                                   cgcAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccga                                                               >  5:182354‑M2/1‑67 (MQ=255)                                                                                   cgcAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCAt                                                               <  2:118882/149‑1 (MQ=255)                                                                                      aaaTGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGc                                                            <  3:152017/149‑1 (MQ=255)                                                                                        aTGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCAt                                                                      >  7:41477/1‑137 (MQ=255)                                                                                        aTGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCAt                                                                      <  8:41477/137‑1 (MQ=255)                                                                                         tGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCCTGGCGAg                                                         <  2:253459/149‑1 (MQ=255)                                                                                             tGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGcc                                                     >  1:12634/1‑149 (MQ=255)                                                                                                gCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTg                                                                           <  3:65010/124‑1 (MQ=255)                                                                                                gCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTg                                                                           >  4:65010/1‑124 (MQ=255)                                                                                                    ttGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATtg                                                                                                             >  3:204244/1‑86 (MQ=255)                                                                                                    ttGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATtg                                                                                                             <  4:204244/86‑1 (MQ=255)                                                                                                       cagcagATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTgg                                            <  4:73790/148‑1 (MQ=255)                                                                                                          cagATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGAGCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAg                                        >  8:62142/1‑149 (MQ=255)                                                                                                            gATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGt                                       >  6:231172/1‑148 (MQ=255)                                                                                                                 aGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGAtgtg                                 >  7:219476/1‑149 (MQ=255)                                                                                                                 aGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGAtgtg                                 >  5:15409/1‑149 (MQ=255)                                                                                                                   gAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGCGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTc                               <  6:137936/149‑1 (MQ=255)                                                                                                                    aGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCctgctgc                                               <  5:116910/132‑1 (MQ=255)                                                                                                                    aGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCctgctgc                                               >  6:116910/1‑132 (MQ=255)                                                                                                                            gcgcgcGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCt                      <  5:231172/149‑1 (MQ=255)                                                                                                                                gcgAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGc                                                      >  1:171702/1‑113 (MQ=255)                                                                                                                                gcgAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGc                                                      <  2:171702/113‑1 (MQ=255)                                                                                                                                  gAGCTGAACCGTGCACGTCTggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaag                >  5:69357‑M2/1‑20 (MQ=255)                                                                                                                                  gAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTgttgtt                <  2:148959/149‑1 (MQ=255)                                                                                                                                   aGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGAt                                    >  3:264793/1‑128 (MQ=255)                                                                                                                                   aGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGAt                                    <  4:264793/128‑1 (MQ=255)                                                                                                                                    gCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGc              >  1:44741/1‑149 (MQ=255)                                                                                                                                    gCTGAACCGTGCAAGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGc              <  2:214925/149‑1 (MQ=255)                                                                                                                                     cTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGcc             <  6:59702/149‑1 (MQ=255)                                                                                                                                      tGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCa            >  7:190577/1‑149 (MQ=255)                                                                                                                                      tGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCa            >  1:252266/1‑149 (MQ=255)                                                                                                                                       gAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATg                                                              <  1:55466/98‑1 (MQ=255)                                                                                                                                       gAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTAGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATg                                                              >  2:55466/1‑98 (MQ=255)                                                                                                                                        aaCCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCAt           <  2:108802/148‑1 (MQ=255)                                                                                                                                               cACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCATGGGACcgc   <  2:44741/149‑1 (MQ=255)                                                                                                                                                aCGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCATGGGACcgcg  <  8:219476/149‑1 (MQ=255)                                                                                                                                                aCGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCATGGGACcgc   >  1:118187/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAGGTGCGCGCGCAAATGCGTGAGCAGTTGCAGCAGATTCAGGAGCGCCTGGCGCGCGAGCTGAACCGTGCACGTCTGGCAGGGGATGCGCTGCCGGGTGCGCAGTTCGATTGTGATGCCGAACTGCCGGGGTTGCTCGGGACCTTGGGCATGATTCATGGCGAGGGCCTGCTGCTGGCAAGTGATGTGTCGCCCGGGCTGTTGTTGCCATGGGACCGCG  >  NC_002947/2678371‑2678662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.