New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2719155	38 (0.780)	3 (0.070)	3/246	NT	7.3%	coding (282/585 nt)	nfuA	Fe/S biogenesis protein NfuA
	?	NC_002947	= 2719178	41 (0.890)					coding (305/585 nt)	nfuA	Fe/S biogenesis protein NfuA

TACTGCAAGCCGGGCGAAGAGAAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATT  >  NC_002947/2719009‑2719302                                                                                                                                                    |                                                                                                                                                    tACTGCAAGCCGGGCGAAGAGAAGCCTGACGACACCGCCGAGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCaa                                                                                                                                                   >  6:104287/1‑149 (MQ=255)                gAAGAGAAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCaa                                                                                                                                    <  1:128945/149‑1 (MQ=255)                   gagaAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGt                                                                                                                                 <  5:186498/149‑1 (MQ=255)                     gaAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGc                                                                                                                               >  1:199030/1‑149 (MQ=255)                     gaAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGc                                                                                                                               <  4:118386/149‑1 (MQ=255)                        gCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCga                                                                                                                            <  2:226168‑M2/149‑3 (MQ=255)                         ccTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgat                                                                                                                           <  2:55869‑M2/149‑4 (MQ=255)                             acgacACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatgg                                                                                                                         >  6:19676‑M2/1‑142 (MQ=255)                              cgacACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCggcaccttggcgtttggcgccttgatggtca                                                                                                                      <  2:271644‑M1/149‑32 (MQ=255)                               gacACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCaa                                                                                                                     >  4:93225/1‑149 (MQ=255)                                acacGGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtc                                                                                                                       >  5:239682‑M2/1‑139 (MQ=255)                                acacCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtc                                                                                                                       <  6:239682‑M2/146‑8 (MQ=255)                                  acCGCCGTGGGTATGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATTGTCAACGa                                                                                                                  <  2:214735/149‑1 (MQ=255)                                   ccgccgTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGaa                                                                                                                 <  3:178541/149‑1 (MQ=255)                                          gggTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGcc                                                                                                          <  1:298958/149‑1 (MQ=255)                                            gTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGACAGCTGACCATC                                                                                                                                                     >  8:292975‑M1/1‑104 (MQ=255)                                                 aaaaGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCTGGGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAACACAGCCCGATc                                                                                                     >  1:218307/1‑148 (MQ=255)                                                 aaaaGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCggcaccttggcgtttggcgccttgatggtcag                                                                                                                     >  4:208328‑M1/1‑99 (MQ=255)                                                 aaaaGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGGCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCggcaccttggcgtttggcgccttgatggtcag                                                                                                                     <  3:208328‑M1/131‑33 (MQ=255)                                                      cTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaac                                                                                              <  3:93225/149‑1 (MQ=255)                                                              cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCa                                                                                        <  5:174574/147‑1 (MQ=255)                                                              cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                      <  5:104287/149‑1 (MQ=255)                                                              cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                      >  2:115796/1‑149 (MQ=255)                                                                   cTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGAt                                                                                                      <  1:12960/128‑1 (MQ=255)                                                                   cTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGAt                                                                                                      >  2:12960/1‑128 (MQ=255)                                                                    ttGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                      <  6:265997/143‑1 (MQ=255)                                                                    ttGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                      >  5:265997/1‑143 (MQ=255)                                                                             tCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGAcc                                                                       >  4:129545/1‑149 (MQ=255)                                                                                       cTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCGGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAAcc                                                             <  8:95462/149‑1 (MQ=255)                                                                                                aaGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaa                                                                                               <  7:289588/107‑1 (MQ=255)                                                                                                aaGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaa                                                                                               >  8:289588/1‑107 (MQ=255)                                                                                                 aGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTgg                                                    <  7:41309/149‑1 (MQ=255)                                                                                                       gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATc                                                                 <  8:186905/130‑1 (MQ=255)                                                                                                       gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATc                                                                 >  7:186905/1‑130 (MQ=255)                                                                                                       gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGgccagc                                               >  7:59788/1‑148 (MQ=255)                                                                                                       gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGgccagc                                               >  7:42040/1‑148 (MQ=255)                                                                                                          ggTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCAt                                            >  2:209687/1‑148 (MQ=255)                                                                                                          ggTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCAt                                            <  1:209687/148‑1 (MQ=255)                                                                                                                     ccACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATgg                                          >  4:278157/1‑139 (MQ=255)                                                                                                                     ccACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATgg                                          <  3:278157/139‑1 (MQ=255)                                                                                                                      cACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGTCCGAGATCAACCCCGGCCTg                                                     <  1:45886/127‑1 (MQ=255)                                                                                                                      cACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTg                                                     >  2:45886/1‑127 (MQ=255)                                                                                                                       accgaccgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAg                              >  7:76797/1‑149 (MQ=255)                                                                                                                             cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGATCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                        <  1:226168/149‑1 (MQ=255)                                                                                                                             cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                        <  8:59788/149‑1 (MQ=255)                                                                                                                             cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                        <  3:129545/149‑1 (MQ=255)                                                                                                                             cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                        >  2:147200/1‑149 (MQ=255)                                                                                                                              gCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggtg                       <  1:55869/149‑1 (MQ=255)                                                                                                                                            cTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgcccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagctttt                           <  3:208328‑M2/131‑100 (MQ=255)                                                                                                                                            cTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagctttt                           >  4:208328‑M2/1‑32 (MQ=255)                                                                                                                                             tGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgtcg        <  2:271644‑M2/149‑119 (MQ=255)                                                                                                                                              gACCATCggcaccttggcgtttggcgccttgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgt          <  6:239682‑M1/146‑140 (MQ=255)                                                                                                                                              gACCATCggcaccttggcgtttggcgccttgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggccgtgt          >  5:239682‑M1/1‑7 (MQ=255)                                                                                                                                                ccATCggcaccttggcgtttggcgccttgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgtcgt       >  6:19676‑M1/1‑5 (MQ=255)                                                                                                                                                 cATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCACGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCa    >  2:302099/1‑149 (MQ=255)                                                                                                                                                  aTCggcaccttggcgtttggcgccttgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgtcgtcagg   <  2:55869‑M1/149‑147 (MQ=255)                                                                                                                                                   tCggcaccttggcgtttggcgccttgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgtcgtcaggc  <  2:226168‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TACTGCAAGCCGGGCGAAGAGAAGCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATT  >  NC_002947/2719009‑2719302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.